Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_026763.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq3283 116 6e-23 seq3439 114 2e-22 seq22495 84.2 4e-13 seq5745 84.2 4e-13 seq54129 80.6 5e-12 >seq3283 Length=49157 Score = 116 bits (128), Expect = 6e-23 Identities = 231/337 (69%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 1606 AATTCTGCATTCTTTAATGCCCA-GTCTTTTAGTGATGAATTCTTGTCCTCGTCCAAGTA 1664 ||||||||||| | || | ||| || || | | ||||||| ||| |||||| | Sbjct 2361 AATTCTGCATTTTGTAGAGTCCAAGTTTTCCAAT-ATGAATTGGACTCCAAATCCAAGAA 2303 Query 1665 CTCTTTATATGATGACGTTGGTCCTGGATTGCATAAGAAGATTGTCGGGATACCGCCTTT 1724 | |||||| ||| ||||| |||||||| | | ||| | || || |||||||| Sbjct 2302 CGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTT 2243 Query 1725 AATTTGAATTGGTTTCCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAA 1784 |||||||| |||||||||||| || | ||| ||||| | | || || || | ||| Sbjct 2242 AATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAA 2183 Query 1785 TTCTTTGAAATGTTTC------AGATAGTGGGGGTCGACGTCATCTATGACGTTATACCA 1838 | || |||| ||| | ||| | || |||||| || |||||||||||||| Sbjct 2182 CTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCA 2123 Query 1839 TGCGTCGTTGCTGTAGATCTTTGGGCTT-AGATCTAGATGTCCGCACAAATAATTATGTG 1897 ||| || || ||| | ||||| || | ||| | | ||| | || || |||| Sbjct 2122 TGCATCATTTGAGTACGT-TTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTG 2064 Query 1898 GGCCTAATGATCGAGCCCACATAGTTTTCCCTGTTCT 1934 |||||||||| |||||||| ||||||||| |||| Sbjct 2063 GGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCT 2027 >seq3439 Length=62978 Score = 114 bits (126), Expect = 2e-22 Identities = 231/338 (68%), Gaps = 10/338 (3%) Strand=Plus/Minus Query 1605 AAATTCTGCATTCTTTAATGCCCA-GTCTTTTAGTGATGAATTCTTGTCCTCGTCCAAGT 1663 |||||||||||| | || | ||| || || | | ||||||| ||| || ||| Sbjct 1042 AAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAAT-ATGAATTGGACTCCAAATCTAAGA 984 Query 1664 ACTCTTTATATGATGACGTTGGTCCTGGATTGCATAAGAAGATTGTCGGGATACCGCCTT 1723 || |||||| ||| | ||||| ||||||| | | ||| | || || ||||||| Sbjct 983 ACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTT 924 Query 1724 TAATTTGAATTGGTTTCCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGA 1783 ||||||||| |||||| ||||| || | |||| ||||| | | || || || | || Sbjct 923 TAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGA 864 Query 1784 ATTCTTTGAAATGTTTC------AGATAGTGGGGGTCGACGTCATCTATGACGTTATACC 1837 | | || |||| ||| | ||| | || ||| ||||| ||||||||||||| Sbjct 863 ACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACC 804 Query 1838 ATGCGTCGTTGCTGTAGATCTTTGGGCTT-AGATCTAGATGTCCGCACAAATAATTATGT 1896 |||| || || ||| | ||||| || | ||| | | ||| | || || ||| Sbjct 803 ATGCATCATTTGAGTACGT-TTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGT 745 Query 1897 GGGCCTAATGATCGAGCCCACATAGTTTTCCCTGTTCT 1934 ||||||||||| |||||||| ||||||||| |||| Sbjct 744 GGGCCTAATGAACGAGCCCATGCTGTTTTCCCTATTCT 707 >seq22495 Length=567 Score = 84.2 bits (92), Expect = 4e-13 Identities = 210/314 (67%), Gaps = 10/314 (3%) Strand=Plus/Minus Query 1606 AATTCTGCATTCTTTAATGCCCA-GTCTTTTAGTGATGAATTCTTGTCCTCGTCCAAGTA 1664 |||||| |||| | ||| | ||| || || | | ||||||| ||| || ||| | Sbjct 448 AATTCTACATTTTGTAAAGTCCAAGTTTTCCAAT-ATGAATTGGACTCCAAATCTAAGAA 390 Query 1665 CTCTTTATATGATGACGTTGGTCCTGGATTGCATAAGAAGATTGTCGGGATACCGCCTTT 1724 |||||| ||| | ||||| |||||||| | | ||| | | || |||| ||| Sbjct 389 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTT 330 Query 1725 AATTTGAATTGGTTTCCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAA 1784 |||||||| |||||| ||||| || | ||| ||||||| | || || || | ||| Sbjct 329 AATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAA 270 Query 1785 TTCTTTGAAATGTTTC------AGATAGTGGGGGTCGACGTCATCTATGACGTTATACCA 1838 | || |||| ||| | ||| | || || |||||| |||||||||||||| Sbjct 269 CTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCA 210 Query 1839 TGCGTCGTTGCTGTAGATCTTTGGGCTT-AGATCTAGATGTCCGCACAAATAATTATGTG 1897 ||| || || ||| | ||||| || | ||| | | ||| | || || |||| Sbjct 209 TGCATCATTTGAGTACGT-TTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTG 151 Query 1898 GGCCTAATGATCGA 1911 |||||||||| ||| Sbjct 150 GGCCTAATGAACGA 137 >seq5745 Length=45059 Score = 84.2 bits (92), Expect = 4e-13 Identities = 194/290 (67%), Gaps = 13/290 (4%) Strand=Plus/Plus Query 1657 TCCAAGTACTCTTTATATGATGACGTTGGTCCT---GGATTGCATAAGAAGATTGTCGGG 1713 || ||| || ||||||| ||| | ||| || |||||||| | | ||| || Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1714 ATACCGCCTTTAATTTGAATTGGTTTCCCGTATTTCGTGTTGCTTTGCCAGTCCCTTTGG 1773 || || ||||||||||||| |||||| ||||| || | || ||||| | | ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1774 GCCCCCATGAATTCTTTGAAATGTT------TCAGATA--GTGGGGGTCGACGTCATCTA 1825 || || ||||| | || |||||| | | ||| ||| || || |||||| | Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGG--GATGTCATCAA 43685 Query 1826 TGACGTTATACCATGCGTCGTTGCTGTAGATCTTTGGGCTTAGATCTAGATGTCCGCACA 1885 |||||||||||||||||||||| || | || | | | ||| | | || | Sbjct 43686 TGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTA 43745 Query 1886 AATAATTATGTGGGCCTAATGATCGAGCCCACATAGTTTTCCCTGTTCTA 1935 |||||||||||| || || || || ||||| | ||||| || ||||| Sbjct 43746 TATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACCGATTCTA 43795 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 5e-12 Identities = 174/258 (67%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 1684 GGTCCTGGATTGCATAAGAAGATTGTCGGGATACCGCCTTTAATTTGAATTGGTTTCCCG 1743 ||||| |||||||| | | ||| | || || ||||||||||||||||||||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1744 TATTTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAATGTTTC--- 1800 || || | ||| || |||| || || || | ||| | || | |||| ||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1801 ---AGATAGTGGGGGTCGACGTCATCTATGACGTTATACCATGCGTCGTTGCTGTAGATC 1857 | ||| | || ||| || || ||||||||||||||| | || || ||| | Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGT- 2082 Query 1858 TTTGGGCTT-AGATCTAGATGTCCGCACAAATAATTATGTGGGCCTAATGATCGAGCCCA 1916 ||||| || | || | | ||| | || || ||| ||| |||||| |||||||| Sbjct 2081 TTTGGAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCA 2022 Query 1917 CATAGTTTTCCCTGTTCT 1934 ||||| ||| |||| Sbjct 2021 TGCTGTTTTTCCTATTCT 2004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8641373392470