Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_027040.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq3283 95.1 2e-16 seq3439 89.7 9e-15 seq22495 84.2 4e-13 seq77518 82.4 1e-12 seq80468 78.8 2e-11 >seq3283 Length=49157 Score = 95.1 bits (104), Expect = 2e-16 Identities = 170/249 (68%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 1602 GAATTCCGCATTCTTTAATGCCCAGGCTTTTAATGCTGAATTCTTATCCTCATTCAGGTA 1661 |||||| ||||| | || | ||| | ||| | |||||| ||| || || | | Sbjct 2362 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 2303 Query 1662 CTCTTTATATGATGACGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTT 1721 | |||||| ||| ||||| |||||||| || | |||| | ||||| |||||||| Sbjct 2302 CGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTT 2243 Query 1722 AATTTGAATGGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAA 1781 |||||||| || ||||||||||| | ||| ||||| | | || || || | ||| Sbjct 2242 AATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAA 2183 Query 1782 TTCTTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCA 1835 | || | | |||| ||| ||| | || ||||| || |||||||||||||| Sbjct 2182 CTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCA 2123 Query 1836 AGCATCGTT 1844 ||||| || Sbjct 2122 TGCATCATT 2114 >seq3439 Length=62978 Score = 89.7 bits (98), Expect = 9e-15 Identities = 131/186 (70%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1665 TTTATATGATGACGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1724 |||||| ||| | ||||| ||||||| || | |||| | ||||| ||||||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1725 TTGAATGGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1784 ||||| || || |||||||| | |||| ||||| | | || || || | ||| | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1785 TTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAAGC 1838 || | | |||| ||| ||| | || || ||||| |||||||||||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1839 ATCGTT 1844 ||| || Sbjct 799 ATCATT 794 >seq22495 Length=567 Score = 84.2 bits (92), Expect = 4e-13 Identities = 130/186 (70%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1665 TTTATATGATGACGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1724 |||||| ||| | ||||| |||||||| || | |||| | |||| |||| |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1725 TTGAATGGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1784 ||||| || || |||||||| | ||| ||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1785 TTTAAAGTGCT------TTAGATAGTGGGGGTCTACGTCATCAATGACGTTATACCAAGC 1838 || | | |||| ||| ||| | || | |||||| |||||||||||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1839 ATCGTT 1844 ||| || Sbjct 206 ATCATT 201 >seq77518 Length=14724 Score = 82.4 bits (90), Expect = 1e-12 Identities = 172/254 (68%), Gaps = 13/254 (5%) Strand=Plus/Minus Query 1602 GAATTCCGCATTCTTTAATGCCCAGGCTTTTAATGCTGAATTCTTATCCTCATTCAGGTA 1661 |||||| ||||| | ||| | ||| | |||| | |||||| ||| || || | | Sbjct 2485 GAATTCTGCATTTTGTAAAGTCCACGATTTTCAATTTGAATTTGAATCTAAATCCAAGAA 2426 Query 1662 CTCTTTATATGATGACGTTGGTCCT---GGATTGCAGAGGAAGATAGTGGGAATTCCGCC 1718 ||||||| ||| | ||| || |||||||| || | |||| ||||| ||||| Sbjct 2425 TGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCC 2366 Query 1719 TTTAATTTGAATGGGCTTCCCGTACTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCAT 1778 ||||||||||| | || ||||||| | || || |||| | ||| || || | Sbjct 2365 TTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTAC 2306 Query 1779 GAATTCTTTAAAGTGCT------TTAGATA--GTGGGGGTCTACGTCATCAATGACGTTA 1830 ||| | || | | |||| ||| ||| ||| || || ||||||||||||||| Sbjct 2305 GAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGG--GACATCATCAATGACGTTA 2248 Query 1831 TACCAAGCATCGTT 1844 ||||| || ||||| Sbjct 2247 TACCACGCGTCGTT 2234 >seq80468 Length=4946 Score = 78.8 bits (86), Expect = 2e-11 Identities = 108/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 1602 GAATTCCGCATTCTTTAATGCCCAGGCTTTTAATGCTGAATTCTTATCCTCATTCAGGTA 1661 |||||| ||||| | ||| | ||| | ||| | |||||| ||| ||||| | | Sbjct 4187 GAATTCTGCATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGACTCCATATTCAAGAA 4246 Query 1662 CTCTTTATATGATGACGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTT 1721 |||||| ||| | ||||| ||||||| || | |||| | |||||||||||||| Sbjct 4247 TGTTTTATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAATTCCGCCTTT 4306 Query 1722 AATTTGAATGGGCTTCCCGTACTTAGTGTTG 1752 ||| |||| || || |||||||| || ||| Sbjct 4307 AATCTGAACAGGTTTTCCGTACTTTGTATTG 4337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8682933826840