Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_027215.1 Length=2796 Score E Sequences producing significant alignments: (Bits) Value seq3283 123 4e-25 seq3439 114 2e-22 seq22495 113 8e-22 seq5745 107 3e-20 seq953 100 5e-18 seq54129 98.7 2e-17 seq815 96.9 6e-17 seq77518 95.1 2e-16 seq1993 95.1 2e-16 seq33 95.1 2e-16 seq442 93.3 7e-16 seq3059 89.7 9e-15 seq20728 86.0 1e-13 seq35612 84.2 4e-13 >seq3283 Length=49157 Score = 123 bits (136), Expect = 4e-25 Identities = 186/265 (70%), Gaps = 6/265 (2%) Strand=Plus/Minus Query 1688 TATACGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTT 1747 |||| ||| | |||||| |||||||| || | |||| | ||||| || |||||||||| Sbjct 2297 TATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTT 2238 Query 1748 GAATGGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTT 1807 ||| ||||||||||| |||| ||| |||||| | | || || || | ||| | || Sbjct 2237 GAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTT 2178 Query 1808 TAAAGTGCT------TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCAT 1861 | | |||| ||||||||| ||| ||||| || |||||||| ||||| |||| Sbjct 2177 GATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCAT 2118 Query 1862 CATTTGAAAATATCTTAGGGCTGAGATCGAGATGTCCACACAAATAATTGTGTGGACCTA 1921 ||||||| | | || | | | ||| | | ||| | || |||||||| |||| Sbjct 2117 CATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTA 2058 Query 1922 ACGATCGTGCCCACATTGTTTTTCC 1946 | || || ||||| |||||| || Sbjct 2057 ATGAACGAGCCCATGCTGTTTTCCC 2033 >seq3439 Length=62978 Score = 114 bits (126), Expect = 2e-22 Identities = 184/265 (69%), Gaps = 6/265 (2%) Strand=Plus/Minus Query 1688 TATACGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTT 1747 |||| ||| | |||||| ||||||| || | |||| | ||||| || |||||||||| Sbjct 977 TATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTT 918 Query 1748 GAATGGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTT 1807 ||| ||||| ||||| |||| |||| ||||| | | || || || | ||| | || Sbjct 917 GAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTT 858 Query 1808 TAAAGTGCT------TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCAT 1861 | | |||| ||||||||| ||| || ||||| |||||||| ||||| |||| Sbjct 857 GATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCAT 798 Query 1862 CATTTGAAAATATCTTAGGGCTGAGATCGAGATGTCCACACAAATAATTGTGTGGACCTA 1921 ||||||| | | || | | | ||| | | ||| | || |||||||| |||| Sbjct 797 CATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTA 738 Query 1922 ACGATCGTGCCCACATTGTTTTTCC 1946 | || || ||||| |||||| || Sbjct 737 ATGAACGAGCCCATGCTGTTTTCCC 713 >seq22495 Length=567 Score = 113 bits (124), Expect = 8e-22 Identities = 137/187 (73%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 1688 TATACGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTT 1747 |||| ||| || |||||| |||||||| || | |||| | |||| || | |||||||| Sbjct 384 TATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTT 325 Query 1748 GAATGGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTT 1807 ||| ||||| ||||| |||| ||| |||||||| | || || || | ||| | || Sbjct 324 GAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTT 265 Query 1808 TAAAGTGCT------TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCAT 1861 | | |||| ||||||||| ||| | |||||| |||||||| ||||| |||| Sbjct 264 GACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCAT 205 Query 1862 CATTTGA 1868 ||||||| Sbjct 204 CATTTGA 198 >seq5745 Length=45059 Score = 107 bits (118), Expect = 3e-20 Identities = 173/249 (69%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 1705 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGTTTCCCGTAT 1764 || |||||||| | | |||| ||||| |||||||||||||||| ||||| ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1765 TTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TT 1818 |||| || |||||| | | ||| || || ||||| | || | | || | || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1819 AAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTTGAAAATATCTTA 1878 |||||| || | ||||||||||||||| ||||| || || || || || | || Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTC 43720 Query 1879 GGGCTGAGATCGAGATGTCCACACAAATAATTGTGTGGACCTAACGATCGTGCCCACATT 1938 | | | ||| | | || | |||||| |||||||| ||||| |||||||| | | Sbjct 43721 GAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAACT 43780 Query 1939 GTTTTTCCG 1947 ||||| ||| Sbjct 43781 GTTTTACCG 43789 >seq953 Length=224861 Score = 100 bits (110), Expect = 5e-18 Identities = 181/265 (68%), Gaps = 6/265 (2%) Strand=Plus/Plus Query 1688 TATACGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTT 1747 |||| ||| || |||||| |||||||| | | |||| | ||||| || |||||||||| Sbjct 1826 TATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTT 1885 Query 1748 GAATGGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTT 1807 |||| | ||| ||||| |||| ||| |||||| | | || | || | ||| | || Sbjct 1886 GAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTT 1945 Query 1808 TAAAGTGCT------TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCAT 1861 | | | || ||||||||| ||| ||||| || || ||||| ||||| |||| Sbjct 1946 GATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCAT 2005 Query 1862 CATTTGAAAATATCTTAGGGCTGAGATCGAGATGTCCACACAAATAATTGTGTGGACCTA 1921 ||||||| | | || | | | ||| | | || | || |||||||| |||| Sbjct 2006 CATTTGAGTACGTTTTCGAATTAAAATCCATAAATCTCATTATGTAGTTGTGTGGGCCTA 2065 Query 1922 ACGATCGTGCCCACATTGTTTTTCC 1946 | || || ||||| |||||| || Sbjct 2066 ATGAACGAGCCCATGCTGTTTTCCC 2090 >seq54129 Length=2260 Score = 98.7 bits (108), Expect = 2e-17 Identities = 172/251 (69%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 1702 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGTTTCCCG 1761 ||||| |||||||| || | |||| | ||||| || |||||||||||||| ||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1762 TATTTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1816 || |||| ||| ||| |||| || || || | ||| | || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1817 -TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTTGAAAATATC 1875 ||||||||| ||| || || || |||||||| ||||| |||||||||| || | Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTT 2081 Query 1876 TTAGGGCTGAGATCGAGATGTCCACACAAATAATTGTGTGGACCTAACGATCGTGCCCAC 1935 || | | | || | | ||| | || |||||| | | ||| || || ||||| Sbjct 2080 TTGGAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCAT 2021 Query 1936 ATTGTTTTTCC 1946 ||||||||| Sbjct 2020 GCTGTTTTTCC 2010 >seq815 Length=151552 Score = 96.9 bits (106), Expect = 6e-17 Identities = 134/187 (72%), Gaps = 7/187 (4%) Strand=Plus/Minus Query 1688 TATACGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTT 1747 |||| ||| || |||||| |||||||| || | ||| | ||||| || |||||||||| Sbjct 85437 TATAGGAT-AATCAGGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTT 85379 Query 1748 GAATGGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTT 1807 || |||||| |||| |||| ||| || ||||| | || || || | ||| | || Sbjct 85378 GACCGGGTTTTTCGTACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATT 85319 Query 1808 TAAAGTGCT------TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCAT 1861 | | | || ||||||||| | | ||||| || |||||||| ||||| |||| Sbjct 85318 GATAATACTTCTAAATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCAT 85259 Query 1862 CATTTGA 1868 ||||||| Sbjct 85258 CATTTGA 85252 >seq77518 Length=14724 Score = 95.1 bits (104), Expect = 2e-16 Identities = 170/249 (68%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 1705 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGTTTCCCGTAT 1764 || |||||||| || | |||| ||||| || ||||||||||||| | ||| |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1765 TTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TT 1818 |||| || ||| |||| | ||| || || | ||| | || | | |||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1819 AAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTTGAAAATATCTTA 1878 |||||| || || |||||||||||||| |||||||| || || || || | || Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTC 2221 Query 1879 GGGCTGAGATCGAGATGTCCACACAAATAATTGTGTGGACCTAACGATCGTGCCCACATT 1938 | | ||| | | || | |||||| |||||||| ||| | |||||||| | | Sbjct 2220 AAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCAAACT 2161 Query 1939 GTTTTTCCG 1947 ||||| ||| Sbjct 2160 GTTTTACCG 2152 >seq1993 Length=81530 Score = 95.1 bits (104), Expect = 2e-16 Identities = 170/249 (68%), Gaps = 6/249 (2%) Strand=Plus/Minus Query 1705 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGTTTCCCGTAT 1764 || |||||||| || | |||| ||||| || |||||||||||| ||||| ||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1765 TTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TT 1818 |||| || |||||| | | ||| || | | ||| | || | | || | || Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1819 AAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTTGAAAATATCTTA 1878 |||||| || ||||||||||||||||| |||||||| | || || || | || Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTTTTC 74224 Query 1879 GGGCTGAGATCGAGATGTCCACACAAATAATTGTGTGGACCTAACGATCGTGCCCACATT 1938 | | | ||| | | || | |||||| |||||||| ||||| |||| ||| | | Sbjct 74223 GAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCAAACT 74164 Query 1939 GTTTTTCCG 1947 ||||| ||| Sbjct 74163 GTTTTACCG 74155 >seq33 Length=454124 Score = 95.1 bits (104), Expect = 2e-16 Identities = 169/247 (68%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 1705 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGTTTCCCGTAT 1764 || |||||||| || | |||| ||||| || | ||||||||||| ||||| ||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1765 TTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TT 1818 |||| || |||||||| | || | || | ||| | || | | || | || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1819 AAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTTGAAAATATCTTA 1878 |||||| || ||||||||||||||||| |||||||| || || || || | | Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTC 403123 Query 1879 GGGCTGAGATCGAGATGTCCACACAAATAATTGTGTGGACCTAACGATCGTGCCCACATT 1938 | | | ||| | | || | ||||| |||||||| ||||| |||||||| | | Sbjct 403122 GAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCAAACT 403063 Query 1939 GTTTTTC 1945 ||||||| Sbjct 403062 GTTTTTC 403056 >seq442 Length=237535 Score = 93.3 bits (102), Expect = 7e-16 Identities = 134/187 (72%), Gaps = 8/187 (4%) Strand=Plus/Plus Query 1688 TATACGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTT 1747 |||| ||| || ||||||| |||||||| || |||| | ||||| | |||||||||| Sbjct 22764 TATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAATTT 22823 Query 1748 GAATGGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTT 1807 ||| | ||| ||||| |||| ||| |||| ||| | ||| || || | ||| | || Sbjct 22824 GAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTGTT 22883 Query 1808 TAAAGTGCT------TTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCAT 1861 | | |||| ||||||||| || ||||| || || ||||| |||| |||| Sbjct 22884 AATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACGTTATACC-TGCAT 22941 Query 1862 CATTTGA 1868 ||||||| Sbjct 22942 CATTTGA 22948 >seq3059 Length=182465 Score = 89.7 bits (98), Expect = 9e-15 Identities = 115/159 (72%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 1693 GATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATG 1752 ||| || |||||| |||||||| || | |||| | ||||| || |||||||||||||| Sbjct 20428 GATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATT 20369 Query 1753 GGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAG 1812 ||||| ||||| |||| ||| || ||||| | || || || | ||| | || | | Sbjct 20368 GGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAA 20309 Query 1813 TGCT------TTAAATAATGCGGGTCTACGTCATCAATG 1845 |||| ||||||||| ||| ||||| |||||| Sbjct 20308 TGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCAATG 20270 >seq20728 Length=3653 Score = 86.0 bits (94), Expect = 1e-13 Identities = 107/146 (73%), Gaps = 7/146 (5%) Strand=Plus/Plus Query 1729 GGAATTCCACCTTTAATTTGAATGGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCCCTT 1788 ||||| || ||||||||||||| ||||| ||||| |||| ||| ||||| || | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1789 TGGGCCCCCATGAATTCTTTAAAGTGCTTT------AAATAATGCGGGTCTACGTCATCA 1842 || || || | ||| | || | | |||||| ||||||| ||| |||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1843 ATGACGTTGTACCACGCATCATTTGA 1868 |||||||| || || ||||||||||| Sbjct 1561 ATGACGTTATATCATGCATCATTTGA 1586 >seq35612 Length=1588 Score = 84.2 bits (92), Expect = 4e-13 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 1688 TATACGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTT 1747 |||| ||| || |||||| |||||||| || | |||| | ||||| || |||||||||| Sbjct 1493 TATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTT 1552 Query 1748 GAATGGGTTTCCCGTATTTTGTGTTGCTCTGCCA 1781 ||| ||||| ||||| |||| |||| |||||| Sbjct 1553 GAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8826549717975