Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_028114.1 Length=2765 Score E Sequences producing significant alignments: (Bits) Value seq3283 114 2e-22 seq22495 105 1e-19 seq3439 102 1e-18 seq54129 96.9 6e-17 seq3059 87.8 3e-14 seq953 87.8 3e-14 seq77518 82.4 1e-12 seq815 82.4 1e-12 seq33 82.4 1e-12 seq80468 80.6 5e-12 seq20728 80.6 5e-12 seq1993 80.6 5e-12 seq30129 77.0 6e-11 seq5745 77.0 6e-11 seq442 77.0 6e-11 >seq3283 Length=49157 Score = 114 bits (126), Expect = 2e-22 Identities = 127/170 (75%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1690 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCG 1749 || || |||||||| || | |||| | ||||| |||||||||||||||| ||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1750 TACTTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTC--- 1806 ||||||| |||| ||||| | | || || || | ||| | || | | |||||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1807 ---AGATAATGCGGATCTACGTCATCAATGACGTTGTACCACGCATCATT 1853 | ||||| |||| ||||| || |||||||| ||||| |||||||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT 2114 >seq22495 Length=567 Score = 105 bits (116), Expect = 1e-19 Identities = 125/170 (74%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1690 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCG 1749 || || |||||||| || | |||| | |||| |||| ||||||||||| ||| || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1750 TACTTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTC--- 1806 ||||||| |||| ||||||| | || || || | ||| | || | | |||||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1807 ---AGATAATGCGGATCTACGTCATCAATGACGTTGTACCACGCATCATT 1853 | ||||| |||| | |||||| |||||||| ||||| |||||||| Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq3439 Length=62978 Score = 102 bits (112), Expect = 1e-18 Identities = 134/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1674 TTTATATGAGGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1733 |||||| || || || || ||||||| || | |||| | ||||| ||||||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1734 TTGAATTGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1793 ||||| ||| || |||||||||| ||| ||||| | | || || || | ||| | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTG 860 Query 1794 TTTAAAGTGCTTC------AGATAATGCGGATCTACGTCATCAATGACGTTGTACCACGC 1847 || | | |||||| | ||||| |||| || ||||| |||||||| ||||| || Sbjct 859 TTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGC 800 Query 1848 ATCATT 1853 |||||| Sbjct 799 ATCATT 794 >seq54129 Length=2260 Score = 96.9 bits (106), Expect = 6e-17 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1690 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCG 1749 || || |||||||| || | |||| | ||||| |||||||||||||||||||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1750 TACTTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTC--- 1806 ||||||| |||| || |||| || || || | ||| | || | |||||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1807 ---AGATAATGCGGATCTACGTCATCAATGACGTTGTACCACGCATCATT 1853 | ||||| |||| || || || |||||||| ||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq3059 Length=182465 Score = 87.8 bits (96), Expect = 3e-14 Identities = 109/150 (73%), Gaps = 6/150 (4%) Strand=Plus/Minus Query 1690 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCG 1749 || || |||||||| || | |||| | ||||| |||||||||||||||||||| || ||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1750 TACTTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTC--- 1806 || |||| |||| | ||||| | || || || | ||| | || | | |||||| Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 20300 Query 1807 ---AGATAATGCGGATCTACGTCATCAATG 1833 | ||||| |||| ||||| |||||| Sbjct 20299 ATTAAATAATTCGGAGGGACGTCGTCAATG 20270 >seq953 Length=224861 Score = 87.8 bits (96), Expect = 3e-14 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Plus Query 1690 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCG 1749 || || |||||||| | | |||| | ||||| ||||||||||||||||||| || ||| Sbjct 1840 GGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGAATTGATTTTCCG 1899 Query 1750 TACTTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1804 ||||||| |||| ||||| | | || | || | ||| | || | | | || Sbjct 1900 TACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGATAATACTTTTTA 1959 Query 1805 -TCAGATAATGCGGATCTACGTCATCAATGACGTTGTACCACGCATCATT 1853 | | ||||| |||| ||||| || || ||||| ||||| |||||||| Sbjct 1960 ATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCATT 2009 >seq77518 Length=14724 Score = 82.4 bits (90), Expect = 1e-12 Identities = 118/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1693 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTAC 1752 || |||||||| || | |||| ||||| |||||||||||||||| || || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1753 TTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TC 1806 |||| ||| || |||| | ||| || || | ||| | || | | |||| | Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1807 AGATAATGCGGATCTACGTCATCAATGACGTTGTACCACGCATCATT 1853 | |||| ||| || |||||||||||||| |||||||| || || Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq815 Length=151552 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1690 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCG 1749 || || |||||||| || | ||| | ||||| ||||||||||||||| || || || Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1750 TACTTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTC--- 1806 ||||||| |||| | ||||| | || || || | ||| | || | | | |||| Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1807 ---AGATAATGCGGATCTACGTCATCAATGACGTTGTACCACGCATCATT 1853 | ||||| | || ||||| || |||||||| ||||| |||||||| Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATT 85255 >seq33 Length=454124 Score = 82.4 bits (90), Expect = 1e-12 Identities = 118/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1693 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTAC 1752 || |||||||| || | |||| ||||| |||| ||||||||||| ||| || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1753 TTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TC 1806 |||| ||| ||||||| | || | || | ||| | || | | || | | Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1807 AGATAATGCGGATCTACGTCATCAATGACGTTGTACCACGCATCATT 1853 | |||| ||| ||||||||||||||||| |||||||| || || Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq80468 Length=4946 Score = 80.6 bits (88), Expect = 5e-12 Identities = 118/166 (71%), Gaps = 11/166 (7%) Strand=Plus/Plus Query 1697 GATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTACTTTG 1756 ||||||| || | |||| | ||||||||||||||||| |||| || || |||||||||| Sbjct 4273 GATTGCAAAGTACGATACTTGGAATTCCGCCTTTAATCTGAACAGGTTTTCCGTACTTTG 4332 Query 1757 TATTGCTTTGCCA--GTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTC------AG 1808 ||||| | ||| || | || || || | ||| | || | | |||||| | Sbjct 4333 TATTGGCCTACCATTGTGC---TGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAA 4389 Query 1809 ATAATGCGGATCTACGTCATCAATGACGTTGTACCACGCATCATTG 1854 ||||| | | ||||| | |||||||| ||||| |||| |||| Sbjct 4390 ATAATTTGAAGGGACGTCGTTGATGACGTTATACCATGCATAATTG 4435 >seq20728 Length=3653 Score = 80.6 bits (88), Expect = 5e-12 Identities = 104/143 (73%), Gaps = 7/143 (5%) Strand=Plus/Plus Query 1717 GGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCCCTT 1776 ||||| || ||||||||||||| ||| || |||||||||| |||| |||| || | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1777 TGGGCCCCCATGAATTCTTTAAAGTGCT------TCAGATAATGCGGATCTACGTCATCA 1830 || || || | ||| | || | | |||| | | ||||| |||| |||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1831 ATGACGTTGTACCACGCATCATT 1853 |||||||| || || |||||||| Sbjct 1561 ATGACGTTATATCATGCATCATT 1583 >seq1993 Length=81530 Score = 80.6 bits (88), Expect = 5e-12 Identities = 114/161 (71%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1693 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTAC 1752 || |||||||| || | |||| ||||| ||| |||||||||||| ||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1753 TTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TC 1806 |||| ||| ||||| | | ||| || | | ||| | || | | || | | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1807 AGATAATGCGGATCTACGTCATCAATGACGTTGTACCACGC 1847 | |||| ||| ||||||||||||||||| |||||||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGC 74243 >seq30129 Length=3650 Score = 77.0 bits (84), Expect = 6e-11 Identities = 87/117 (74%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1690 GGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCG 1749 || || |||||||| || | |||| | ||||| |||||||||||||||| | | || ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1750 TACTTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTC 1806 ||||||| |||| ||||| | | || || || | ||| | || | | |||||| Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTC 2487 >seq5745 Length=45059 Score = 77.0 bits (84), Expect = 6e-11 Identities = 117/167 (70%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1693 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATTGGCTTCCCGTAC 1752 || |||||||| | | |||| ||||| || ||||||||||||| ||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1753 TTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------TC 1806 |||| ||| ||||| | | ||| || || ||||| | || | | || | | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1807 AGATAATGCGGATCTACGTCATCAATGACGTTGTACCACGCATCATT 1853 | |||| ||| | ||||||||||||||| ||||| || || || Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq442 Length=237535 Score = 77.0 bits (84), Expect = 6e-11 Identities = 130/186 (70%), Gaps = 8/186 (4%) Strand=Plus/Plus Query 1674 TTTATATGAGGATGTCGGGCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1733 |||||| || | | || || |||||||| || |||| | ||||| |||||||||| Sbjct 22762 TTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAAT 22821 Query 1734 TTGAATTGGCTTCCCGTACTTTGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTC 1793 ||||| || || |||||||||| |||| ||| ||| | ||| || || | ||| | Sbjct 22822 TTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTG 22881 Query 1794 TTTAAAGTGCT------TCAGATAATGCGGATCTACGTCATCAATGACGTTGTACCACGC 1847 || | | |||| | | ||||| || | ||||| || || ||||| |||| || Sbjct 22882 TTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACGTTATACC-TGC 22939 Query 1848 ATCATT 1853 |||||| Sbjct 22940 ATCATT 22945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8730888174190