Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_028124.1 Length=2776 Score E Sequences producing significant alignments: (Bits) Value seq77518 102 1e-18 seq5745 102 1e-18 seq33 102 1e-18 seq22495 93.3 7e-16 seq1993 93.3 7e-16 seq3283 91.5 3e-15 seq3439 87.8 3e-14 seq4104 84.2 4e-13 seq442 82.4 1e-12 seq35612 78.8 2e-11 seq30129 78.8 2e-11 seq54129 77.0 6e-11 >seq77518 Length=14724 Score = 102 bits (112), Expect = 1e-18 Identities = 123/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 1696 CCCAGGATTGCATAGGAAGATAGTGGGTATACCTCCTTTAATTTGAACTGGCTTTCCGTA 1755 |||||||||||| || | |||| || || || |||||||||||||||| ||| |||| Sbjct 2401 CCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTA 2342 Query 1756 CTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------T 1809 ||||| |||||| || |||| | ||| || || | ||| | || | | |||| | Sbjct 2341 CTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1810 TAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTT 1857 || || ||| ||| |||||||||||||| ||||| || ||||| Sbjct 2281 TAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq5745 Length=45059 Score = 102 bits (112), Expect = 1e-18 Identities = 123/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Plus Query 1696 CCCAGGATTGCATAGGAAGATAGTGGGTATACCTCCTTTAATTTGAACTGGCTTTCCGTA 1755 |||||||||||| | | |||| || || || ||||||||||||||||| || ||||| Sbjct 43540 CCCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTA 43599 Query 1756 CTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------T 1809 ||||| |||||| ||||| | | ||| || || ||||| | || | | || | | Sbjct 43600 CTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1810 TAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTT 1857 || || ||| || ||||||||||||||| ||||| || ||||| Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq33 Length=454124 Score = 102 bits (112), Expect = 1e-18 Identities = 123/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 1696 CCCAGGATTGCATAGGAAGATAGTGGGTATACCTCCTTTAATTTGAACTGGCTTTCCGTA 1755 |||||||||||| || | |||| || || || | ||||||||||||||| |||||||| Sbjct 403303 CCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTA 403244 Query 1756 CTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------T 1809 ||||| |||||| ||||||| | || | || | ||| | || | | || | | Sbjct 403243 CTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1810 TAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTT 1857 || || ||| |||||||||||||||||| ||||| || ||||| Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq22495 Length=567 Score = 93.3 bits (102), Expect = 7e-16 Identities = 132/186 (71%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1678 TTTATAGCTGGAATTGGGCCCAGGATTGCATAGGAAGATAGTGGGTATACCTCCTTTAAT 1737 ||||||| ||| || ||||||||||| || | |||| | | || || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1738 TTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTC 1797 ||||||||| ||||||||||||| ||| | ||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1798 TTTAAAGTGCT------TTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGC 1851 || | | |||| ||| || | ||| || |||||| |||||||| ||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1852 CTCGTT 1857 || || Sbjct 206 ATCATT 201 >seq1993 Length=81530 Score = 93.3 bits (102), Expect = 7e-16 Identities = 121/168 (72%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 1696 CCCAGGATTGCATAGGAAGATAGTGGGTATACCTCCTTTAATTTGAACTGGCTTTCCGTA 1755 |||||||||||| || | |||| || || || |||||||||||||||| || ||||| Sbjct 74404 CCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTA 74345 Query 1756 CTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT------T 1809 ||||| |||||| ||||| | | ||| || | | ||| | || | | || | | Sbjct 74344 CTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAAT 74285 Query 1810 TAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTT 1857 || || ||| |||||||||||||||||| ||||| || | ||| Sbjct 74284 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq3283 Length=49157 Score = 91.5 bits (100), Expect = 3e-15 Identities = 122/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1694 GGCCCAGGATTGCATAGGAAGATAGTGGGTATACCTCCTTTAATTTGAACTGGCTTTCCG 1753 || ||||||||||| || | |||| | || || || ||||||||||||||||| || ||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1754 TACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1808 ||||||| ||| | ||||| | | || || || | ||| | || | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1809 -TTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTT 1857 ||| || | ||| |||||| || |||||||| ||||| || || || Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT 2114 >seq3439 Length=62978 Score = 87.8 bits (96), Expect = 3e-14 Identities = 121/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1694 GGCCCAGGATTGCATAGGAAGATAGTGGGTATACCTCCTTTAATTTGAACTGGCTTTCCG 1753 || ||| ||||||| || | |||| | || || || ||||||||||||||||| |||||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1754 TACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1808 ||||||| || | ||||| | | || || || | ||| | || | | |||| Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1809 -TTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCCTCGTT 1857 ||| || | ||| ||| ||||| |||||||| ||||| || || || Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT 794 >seq4104 Length=64936 Score = 84.2 bits (92), Expect = 4e-13 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 1678 TTTATAGCTGGAATTGGGCCCAGGATTGCATAGGAAGATAGTGGGTATACCTCCTTTAAT 1737 ||||||| ||| ||| ||||||||||| || | |||| | || || || |||||||| Sbjct 20846 TTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 20787 Query 1738 TTGAACTGGCTTTCCGTACTTTGTAT 1763 ||||||||| ||||||||||||| || Sbjct 20786 TTGAACTGGTTTTCCGTACTTTGCAT 20761 >seq442 Length=237535 Score = 82.4 bits (90), Expect = 1e-12 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 1678 TTTATAGCTGGAATTGGGCCCAGGATTGCATAGGAAGATAGTGGGTATACCTCCTTTAAT 1737 ||||||| |||| || ||||||||||| || |||| | || || | |||||||| Sbjct 22762 TTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAAT 22821 Query 1738 TTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTC 1797 |||||||| ||||||||||||| ||| | ||| ||| | ||| || || | ||| | Sbjct 22822 TTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTG 22881 Query 1798 TTTAAAGTGCTTT 1810 || | | |||||| Sbjct 22882 TTAATAATGCTTT 22894 >seq35612 Length=1588 Score = 78.8 bits (86), Expect = 2e-11 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1678 TTTATAGCTGGAATTGGGCCCAGGATTGCATAGGAAGATAGTGGGTATACCTCCTTTAAT 1737 ||||||| ||| || ||||||||||| || | |||| | || || || |||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1738 TTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCA 1773 ||||||||| ||||||||||||| || | ||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq30129 Length=3650 Score = 78.8 bits (86), Expect = 2e-11 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 1694 GGCCCAGGATTGCATAGGAAGATAGTGGGTATACCTCCTTTAATTTGAACTGGCTTTCCG 1753 || ||||||||||| || | |||| | || || || ||||||||||||||| | |||||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1754 TACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTT 1809 ||||||| ||| | ||||| | | || || || | ||| | || | | ||||| Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTT 2486 >seq54129 Length=2260 Score = 77.0 bits (84), Expect = 6e-11 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 1694 GGCCCAGGATTGCATAGGAAGATAGTGGGTATACCTCCTTTAATTTGAACTGGCTTTCCG 1753 || ||||||||||| || | |||| | || || || ||||||||||||| ||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1754 TACTTTGTATTTGATTGCCAGT 1775 ||||||| ||| | || |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGT 2179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8762612378475