Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_028140.1 Length=2624 Score E Sequences producing significant alignments: (Bits) Value seq33 111 3e-21 seq5745 107 3e-20 seq3283 100 5e-18 seq3439 98.7 2e-17 seq77518 95.1 2e-16 seq4295 95.1 2e-16 seq22495 91.5 2e-15 seq1993 87.8 3e-14 seq1010 86.0 1e-13 seq490 82.4 1e-12 >seq33 Length=454124 Score = 111 bits (122), Expect = 3e-21 Identities = 235/349 (67%), Gaps = 14/349 (4%) Strand=Plus/Minus Query 1458 TAGAGGGGGGAGTCGAGGAAGACGAATGTCGCATTGTGAAGGGTCCAGGCTTTGAGAGAT 1517 || || |||| ||||| |||| |||| ||||| || | ||||| | ||| | | Sbjct 403409 TATAGAGGGGTGTCGATGAAGTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTT 403350 Query 1518 GCGTTTTCCTCTTTGTCGAGGAAATCTTTATAA-------CTGGCCCCCTCGCCTGGATT 1570 | ||| ||| | |||| ||| |||||||| |||| |||| ||||| Sbjct 403349 GAATTTGAATCTATATCGAAGAACGCTTTATAAGACAACTCTGGACCCCA-----GGATT 403295 Query 1571 GCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCATA-TTTACAGT 1629 ||| |||||||| |||| ||||| | ||||||||||||||| ||||| || ||| || | Sbjct 403294 GCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATT 403235 Query 1630 TGCTTTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGTTTCATCTTTTTATGGG 1689 || ||||||| | || | || | || || || |||| || | || || | Sbjct 403234 TG-ACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAG 403176 Query 1690 GCGGGCTGACGTCATCGATGACGTTGTATTGGGCCTCGTTTGAGTAGACTCTTGGGTTGA 1749 || ||||||||| |||||||| || || ||||| ||||| ||| | || | Sbjct 403175 CTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCA 403116 Query 1750 AGTCCAGATGCCCGCTTAGATAATTATGTGGGCCCAATGCACGAGCCCA 1798 | |||| | || ||| ||||||||||| ||||| | ||| ||||| Sbjct 403115 AATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq5745 Length=45059 Score = 107 bits (118), Expect = 3e-20 Identities = 235/350 (67%), Gaps = 13/350 (4%) Strand=Plus/Plus Query 1457 ATAGAGGGGGGAGTCGAGGAAGACGAATGTCGCATTGTGAAGGGTCCAGGCTTTGAGAGA 1516 |||||| |||| ||||| |||| ||| ||||| || | ||| | | ||| | Sbjct 43432 ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACGATTTCTAATT 43491 Query 1517 TGCGTTTTCCTCTTTGTCGAGGAAATCTTTATAA-------CTGGCCCCCTCGCCTGGAT 1569 || ||| ||| | || | ||| |||||||| |||| |||| | |||| Sbjct 43492 TGAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCCC----CAGGAT 43547 Query 1570 TGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCATA-TTTACAG 1628 |||| | |||||| |||| ||||| ||||||||||||||||| || || || ||| || Sbjct 43548 TGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCAT 43607 Query 1629 TTGCTTTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGTTTCATCTTTTTATGG 1688 ||| ||||| | | ||| || || |||| || || ||||||| | || || Sbjct 43608 TTG-ACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAA 43666 Query 1689 GGCGGGCTGACGTCATCGATGACGTTGTATTGGGCCTCGTTTGAGTAGACTCTTGGGTTG 1748 | || || |||||| |||||||| || || ||||| || || | | | || Sbjct 43667 GCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTC 43726 Query 1749 AAGTCCAGATGCCCGCTTAGATAATTATGTGGGCCCAATGCACGAGCCCA 1798 || |||| | || ||| |||||||||||| ||||| | ||| ||||| Sbjct 43727 AAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 >seq3283 Length=49157 Score = 100 bits (110), Expect = 5e-18 Identities = 232/345 (67%), Gaps = 6/345 (2%) Strand=Plus/Minus Query 1457 ATAGAGGGGGGAGTCGAGGAAGACGAATGTCGCATTGTGAAGGGTCCAGGCTTTGAGAGA 1516 |||| |||||| ||||| |||| |||| ||||| || || ||||| | ||| | | Sbjct 2386 ATAGTGGGGGGTGTCGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATA 2327 Query 1517 TGCGTTTTCCTCTTTGTCGAGGAAATCTTTATA--ACTGGCCCCCTCGCCTGGATTGCAG 1574 || || ||| || | ||| |||||| | || | || | |||||||| Sbjct 2326 TGAATTGGACTCCAAATCCAAGAACGTTTTATAGGATTGATCAGGTC--CAGGATTGCAA 2269 Query 1575 AGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCATA-TTTACAGTTGCT 1633 || ||||| ||| ||||| ||||||||||||||||| || || || ||| || | || Sbjct 2268 AGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCC 2209 Query 1634 TTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGTTTCATCTTTTTATGGGGCGG 1693 | |||| | || || || || | || || || |||| ||| | || || ||| Sbjct 2208 T-GCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGG 2150 Query 1694 GCTGACGTCATCGATGACGTTGTATTGGGCCTCGTTTGAGTAGACTCTTGGGTTGAAGTC 1753 |||||| ||||||||||| || || || |||||||| | | | || || || Sbjct 2149 AGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATC 2090 Query 1754 CAGATGCCCGCTTAGATAATTATGTGGGCCCAATGCACGAGCCCA 1798 || | || ||| || || |||||||| |||| ||||||||| Sbjct 2089 CATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq3439 Length=62978 Score = 98.7 bits (108), Expect = 2e-17 Identities = 161/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 1567 GATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCATATTTAC 1626 ||||||| || ||||| ||| ||||| ||||||||||||||||| ||||| || || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1627 AGTTGCTTTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGTTTCATCTTTTTAT 1686 |||| ||||| | || || || || | || || || |||| ||| | || || Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1687 GGGGCGGGCTGACGTCATCGATGACGTTGTATTGGGCCTCGTTTGAGTAGACTCTTGGGT 1746 ||| ||| |||||||||||||| || || || |||||||| | | | | Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1747 TGAAGTCCAGATGCCCGCTTAGATAATTATGTGGGCCCAATGCACGAGCCCA 1798 | || |||| | || ||| || || |||||||| |||| ||||||||| Sbjct 776 TAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq77518 Length=14724 Score = 95.1 bits (104), Expect = 2e-16 Identities = 239/360 (66%), Gaps = 14/360 (4%) Strand=Plus/Minus Query 1447 TTGAGGCTTGATAGAGGGGGGAGTCGAGGAAGACGAATGTCGCATTGTGAAGGGTCCAGG 1506 ||||| | | |||||| ||| ||||| |||| |||| ||||| || | ||||| | Sbjct 2518 TTGAGTCCT-ATAGAGAAGGGTGTCGATGAAGTGGAATTCTGCATTTTGTAAAGTCCACG 2460 Query 1507 CTTTGAGAGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTATAA-------CTGGCCCCC 1559 ||| | || ||| ||| || | ||| |||||||| |||| |||| Sbjct 2459 ATTTTCAATTTGAATTTGAATCTAAATCCAAGAATGCTTTATAAGATAAATCTGGACCCC 2400 Query 1560 TCGCCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCA 1619 | |||||||| || ||||| |||| ||||| |||||||||||||||| ||| | Sbjct 2399 ----CAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCG 2344 Query 1620 TA-TTTACAGTTGCTTTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGTTTCAT 1678 || ||| || ||| || |||| ||||| || || | || || || |||| || | Sbjct 2343 TACTTTGCATTTG-ACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTT 2285 Query 1679 CTTTTTATGGGGCGGGCTGACGTCATCGATGACGTTGTATTGGGCCTCGTTTGAGTAGAC 1738 || || | || ||| ||||| |||||||| || || ||||| ||||| Sbjct 2284 AATTAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGT 2225 Query 1739 TCTTGGGTTGAAGTCCAGATGCCCGCTTAGATAATTATGTGGGCCCAATGCACGAGCCCA 1798 | | || || |||| | || ||| |||||||||||| ||||| ||| ||||| Sbjct 2224 TTTCAAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCA 2165 >seq4295 Length=67413 Score = 95.1 bits (104), Expect = 2e-16 Identities = 171/245 (70%), Gaps = 4/245 (2%) Strand=Plus/Minus Query 1565 TGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCATA-TT 1623 ||||||| ||||||||||| ||||||| || |||||||||||| |||| || || || || Sbjct 46844 TGGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTT 46785 Query 1624 TACAGTTGCTTTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGTTTCATCTTTT 1683 || ||| || ||| | |||||| ||||||||||||| |||| ||| ||| Sbjct 46784 GGCATTTGAGTT-CCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCA 46726 Query 1684 TATGGGGCGGGCTGACGTCATCGATGACGTTGTATTGGGCCTCGTTTGAGTAGACTCTTG 1743 || || | |||||||| || |||||||| || | || || | | | | Sbjct 46725 AATAGGATAGAGATACGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCG 46666 Query 1744 GGTTGAAGTCCA-GATGCCCGCTTAGATAATTATGTGGGCCCAATGCACGAGCCCACATC 1802 || || |||| || |||| ||| || |||||||||| || | || ||||| || Sbjct 46665 AATTAAAATCCATGAAGCCC-ATTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATT 46607 Query 1803 GTCTT 1807 ||||| Sbjct 46606 GTCTT 46602 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 2e-15 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 1563 CCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCATA- 1621 || |||||||| || ||||| | | ||||| | ||||||||||||||| ||||| || Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1622 TTTACAGTTGCTTTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGTTTCATCTT 1681 ||| || | || | |||||| || || || || | || || || ||||| ||| | | Sbjct 307 TTTGCATTGGCCT-GCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAAT 249 Query 1682 TTTATGGGGCGGGCTGACGTCATCGATGACGTTGTATTGGGCCTCGTTTGAGTAGACTCT 1741 | || ||| || ||||||||||||||| || || || |||||||| | | Sbjct 248 TAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTT 189 Query 1742 TGGGTTGAAGTCCAGATGCCCGCTTAGATAATTATGTGGGCCCAATGCACGA 1793 | || || |||| | || ||| || || |||||||| |||| |||| Sbjct 188 GGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAACGA 137 >seq1993 Length=81530 Score = 87.8 bits (96), Expect = 3e-14 Identities = 165/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 1560 TCGCCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCA 1619 || || |||||||| |||||||| |||| ||||| |||||||||||||||| || || Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1620 TA-TTTACAGTTGCTTTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGTTTCAT 1678 || ||| || ||| ||||| | ||||| || | | || || || |||| || | Sbjct 74346 TACTTTGCATTTG-ACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTT 74288 Query 1679 CTTTTTATGGGGCGGGCTGACGTCATCGATGACGTTGTATTGGGCCTCGTTTGAGTAGAC 1738 || || | || ||||||||| |||||||| || || | ||| || || Sbjct 74287 AATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGT 74228 Query 1739 TCTTGGGTTGAAGTCCAGATGCCCGCTTAGATAATTATGTGGGCCCAATGCACGAGCCCA 1798 | | | || || |||| | || ||| |||||||||||| ||||| | ||| | ||| Sbjct 74227 TTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCA 74168 >seq1010 Length=204159 Score = 86.0 bits (94), Expect = 1e-13 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1563 CCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCATA- 1621 |||||||||||||||||||| ||||||| | |||||||||||||| | || || || Sbjct 36484 CCTGGATTGCAGAGCACGATACATGGGATTTCCTCTTTAATTTGAACTAGTTTACCGTAC 36543 Query 1622 TTTACAGTTGCTTTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGTTT 1675 || ||| || |||||| | | | ||||| ||| ||||||||||||| ||| Sbjct 36544 TTGACATGTG-ATTGCCAATTGTGCTAGGCCCTAATCAGCTCTTTCCAATTTTT 36596 Score = 86.0 bits (94), Expect = 1e-13 Identities = 202/298 (68%), Gaps = 9/298 (3%) Strand=Plus/Minus Query 1563 CCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCATAT 1622 ||| |||||||||||||||| || |||| | ||||||||| |||||| || || || Sbjct 40918 CCTAGATTGCAGAGCACGATACATAGGATTCTCCCTTTAATTAAAACTGGTTTACCGTAC 40859 Query 1623 TTA-CAGTTGCTTTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGTTTCATCTT 1681 ||| || ||| || |||| | ||| ||| |||||||||||||||||| || | || Sbjct 40858 TTAGCATTTGATT-GCCAATTGTACTGGACCCTAATGAGCTCTTTCCAATGATT--TTTT 40802 Query 1682 TT---TATGGGGCGGGCTGACGTCATCGATGACGTTGTATTGGGCCTCGTTTGAGTAGAC 1738 || || || | |||||||| || || || || || | || || | Sbjct 40801 TTGCAAATAGGATAGAGACACGTCATCTATAACATTATACCATGCATTATTCGAAAATGA 40742 Query 1739 TCTTGGGTTGAAGTCCA-GATGCCCGCTTAGATAATTATGTGGGCCCAATGCACGAGCCC 1797 | ||| || || || | || |||| ||| || ||||||||||| || | || ||| Sbjct 40741 TTTTGAATTAAAATCTATGAAGCCC-ATTATGTAGTTATGTGGGCCTAAAGATCGTTCCC 40683 Query 1798 ACATCGTCTTCCCCGTCCGACTATCACCTTCAACTATGATACTAATAGGTCTGTCAGG 1855 | || ||||| || | | | | |||||| | |||| ||| |||| |||| ||| Sbjct 40682 ATATTGTCTTTCCAATTCTAGTTGGACCTTCTAATATGTGACTCTTAGGCCTGTAAGG 40625 >seq490 Length=137872 Score = 82.4 bits (90), Expect = 1e-12 Identities = 166/244 (68%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 1568 ATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCATATTTACA 1627 |||||| || || |||||||| || || ||||||||||| | |||||| ||||||| | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1628 GTTGCTTTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGTTTCATCTTTTTATG 1687 | ||||||| | | ||||||||| ||||| ||||||| ||| || | Sbjct 70558 ATCAGCTTGCCAGCTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAGAGA 70499 Query 1688 GGGCGGGCTGACGTCATCGATGACGTTGTATTGGGCCTCGTTTGAGTA-GACTCTTGGGT 1746 | || ||||||||| |||||||| || | ||| || || | | || || | Sbjct 70498 TGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTGGAAAATGTCT-TTCTAT 70440 Query 1747 TGAAGTCCAGATGCCCGCTTAGATAATTATGTGGGCCCAATGCACGAGCCCACATCGTCT 1806 |||| |||| | || | | ||||||||||| ||||| | |||||| |||| Sbjct 70439 TGAAATCCATAACGCCCATAAAGTAATTATGTGGACCCAAACTTCTAGCCCATTCAGTCT 70380 Query 1807 TCCC 1810 |||| Sbjct 70379 TCCC 70376 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8280117309100