Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_028142.1 Length=2668 Score E Sequences producing significant alignments: (Bits) Value seq3439 127 3e-26 seq3283 118 2e-23 seq22495 114 2e-22 seq54129 102 1e-18 seq815 96.9 6e-17 seq33 95.1 2e-16 seq4295 78.8 2e-11 seq490 77.0 5e-11 seq442 77.0 5e-11 >seq3439 Length=62978 Score = 127 bits (140), Expect = 3e-26 Identities = 172/235 (73%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 1612 GATTGCAGAGCACGATTGATGGGATTCCGCCTTTAATTTGAACTGGCTTTCCGTA-TTTG 1670 ||||||| || ||||| ||| || |||||||||||||||||||| |||||||| |||| Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1671 CAGTTGCTTTGCCAGTCCCTTTGGGCCCCCATCAATTCCTTCCAGTGCTTCAACTTTAGG 1730 | |||| ||||| | | || || || | || | | | |||||| ||| Sbjct 896 C-GTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAA 838 Query 1731 TATTGCGGTGTGACATCATCGATGACGTTATACTCCGCATCGTTTGAGTATACCCTTGGG 1790 || | ||| | |||||||||||||||||||||| ||||| |||||| ||| || || Sbjct 837 TAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAG--TACGTTTTGG 780 Query 1791 --TTGAAGTCCAGATGTCCGCTTAGATAGTTATGCGGGCCTAATGCACGAGCCCA 1843 || || |||| | ||| ||| ||||| || |||||||||| ||||||||| Sbjct 779 AATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq3283 Length=49157 Score = 118 bits (130), Expect = 2e-23 Identities = 173/240 (72%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 1607 TCCTGGATTGCAGAGCACGATTGATGGGATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1666 ||| |||||||| || ||||| ||| || |||||||||||||||||||| || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1667 -TTTGCAGTTGCTTTGCCAGTCCCTTTGGGCCCCCATCAATTCCTTCCAGTGCTTCAACT 1725 |||||| | || | |||| | | || || || | || | | | |||||| Sbjct 2221 CTTTGCATTGGCCT-GCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1726 TTAGGTATTGCGGTGTGACATCATCGATGACGTTATACTCCGCATCGTTTGAGTATACCC 1785 ||| || | ||| | ||| || ||||||||||||||| ||||| |||||| ||| Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAG--TACGT 2105 Query 1786 TTGGG--TTGAAGTCCAGATGTCCGCTTAGATAGTTATGCGGGCCTAATGCACGAGCCCA 1843 || || || || |||| | ||| ||| ||||| || |||||||||| ||||||||| Sbjct 2104 TTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq22495 Length=567 Score = 114 bits (126), Expect = 2e-22 Identities = 169/235 (72%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 1607 TCCTGGATTGCAGAGCACGATTGATGGGATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1666 ||| |||||||| || ||||| | | || |||| ||||||||||||||| |||||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1667 -TTTGCAGTTGCTTTGCCAGTCCCTTTGGGCCCCCATCAATTCCTTCCAGTGCTTCAACT 1725 |||||| | || | |||||| | || || || | || | | || |||||| Sbjct 308 CTTTGCATTGGCCT-GCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA 250 Query 1726 TTAGGTATTGCGGTGTGACATCATCGATGACGTTATACTCCGCATCGTTTGAGTATACCC 1785 ||| || | ||| | || |||||||||||||||||| ||||| |||||| ||| Sbjct 249 TTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAG--TACGT 192 Query 1786 TTGGG--TTGAAGTCCAGATGTCCGCTTAGATAGTTATGCGGGCCTAATGCACGA 1838 || || || || |||| | ||| ||| ||||| || |||||||||| |||| Sbjct 191 TTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGAACGA 137 >seq54129 Length=2260 Score = 102 bits (112), Expect = 1e-18 Identities = 167/238 (70%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 1607 TCCTGGATTGCAGAGCACGATTGATGGGATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1666 ||| |||||||| || ||||| ||| || |||||||||||||||| ||| |||||||| Sbjct 2258 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTA 2199 Query 1667 -TTTGCAGTTGCTTTGCCAGTCCCTTTGGGCCCCCATCAATTCCTTCCAGTGCTTCAACT 1725 |||||| ||| || |||| || || || | || | | | |||||| Sbjct 2198 CTTTGCA-TTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA 2140 Query 1726 TTAGGTATTGCGGTGTGACATCATCGATGACGTTATACTCCGCATCGTTTGAGTATACCC 1785 ||| || | ||| | |||||| ||||||||||||||| |||| ||||||||| Sbjct 2139 TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTATGTTT 2080 Query 1786 TTGGGTTGAAGTCCAGATGTCCGCTTAGATAGTTATGCGGGCCTAATGCACGAGCCCA 1843 | | || || | || | ||| ||| ||||| || ||| ||||| ||||||||| Sbjct 2079 TGGAATTAAAATTCATAAATCCCATTATGTAGTTGTGTTGGCATAATGAACGAGCCCA 2022 >seq815 Length=151552 Score = 96.9 bits (106), Expect = 6e-17 Identities = 168/240 (70%), Gaps = 6/240 (3%) Strand=Plus/Minus Query 1607 TCCTGGATTGCAGAGCACGATTGATGGGATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1666 ||| |||||||| || || || ||| || ||||||||||||||| | || ||| |||| Sbjct 85422 TCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCGTA 85363 Query 1667 -TTTGCAGTTGCTTTGCCAGTCCCTTTGGGCCCCCATCAATTCCTTCCAGTGCTTCAACT 1725 |||||| | || || ||||| | || || || | || | | | | |||| | Sbjct 85362 CTTTGCATTGGCCTT-CCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAAA 85304 Query 1726 TTAGGTATTGCGGTGTGACATCATCGATGACGTTATACTCCGCATCGTTTGAGTATACCC 1785 ||| || | | | | ||| || ||||||||||||||| ||||| |||||| ||| Sbjct 85303 TTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAG--TACGT 85246 Query 1786 TTGGG--TTGAAGTCCAGATGTCCGCTTAGATAGTTATGCGGGCCTAATGCACGAGCCCA 1843 || || || || |||| | ||| ||| ||||| || | ||||||| ||||||||| Sbjct 85245 TTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGTGCCTAATAAACGAGCCCA 85186 >seq33 Length=454124 Score = 95.1 bits (104), Expect = 2e-16 Identities = 170/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 1608 CCTGGATTGCAGAGCACGATTGATGGGATTCCGCCTTTAATTTGAACTGGCTTTCCGTA- 1666 || |||||||| |||||||| |||| || |||| ||||||||||||||| |||||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1667 TTTGCAGTTGCTTTGCCAGTCCCTTTGGGCCCCCATCAATTCCTTCCAGTGCTTCAACTT 1726 |||||| ||| ||||||| | || | || | || | | | || || | Sbjct 403242 TTTGCATTTG-ACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1727 TAGGTATTGCGGTGTGACATCATCGATGACGTTATACTCCGCATCGTTTGAGTATACCCT 1786 || || || | ||| ||||| |||||||||||| ||| ||||| |||||| || Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCT 403124 Query 1787 TGGGTTGAAGTCCAGATGTCCGCTTAGATAGTTATGCGGGCCTAATGCACGAGCCCACAT 1846 | || || |||| | || ||| || ||||| || || || | ||| ||||| | Sbjct 403123 CGAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCAAAC 403064 Query 1847 CGTTTT 1852 ||||| Sbjct 403063 TGTTTT 403058 >seq4295 Length=67413 Score = 78.8 bits (86), Expect = 2e-11 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 1610 TGGATTGCAGAGCACGATTGATGGGATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTT 1669 ||||||| ||||||||||| |||||||||| |||||||||||| |||| || ||||| || Sbjct 46844 TGGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTT 46785 Query 1670 G 1670 | Sbjct 46784 G 46784 >seq490 Length=137872 Score = 77.0 bits (84), Expect = 5e-11 Identities = 110/154 (71%), Gaps = 6/154 (4%) Strand=Plus/Minus Query 1613 ATTGCAGAGCACGATTGATGGGATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTGCA 1672 |||||| || || |||||||| ||||| ||||||||||| | |||||| | ||||| | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1673 GTTGCTTTGCCAGTCCCTTTG---GGCCCCCATCAATTCCTTCCAGTGCTTCAACTTTAG 1729 | ||||||| || || |||||| || | ||| |||| |||||| | || Sbjct 70558 ATCAGCTTGCCAG---CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAG 70502 Query 1730 GTATTGCGGTGTGACATCATCGATGACGTTATAC 1763 || || | ||| ||||| |||||||||||| Sbjct 70501 AGATGCTGGAGGGACGTCATCTATGACGTTATAC 70468 >seq442 Length=237535 Score = 77.0 bits (84), Expect = 5e-11 Identities = 163/238 (68%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 1607 TCCTGGATTGCAGAGCACGATTGATGGGATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1666 ||| |||||||| || |||| ||| || |||||||||||||||||| |||||||| Sbjct 22780 TCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAATTTGAACTGATTTTCCGTA 22839 Query 1667 -TTTGCAGTTGCTTTGCCAGTCCCTTTGGGCCCCCATCAATTCCTTCCAGTGCTTCAACT 1725 |||||| ||| ||| ||| | ||| || || | || | | | ||||| Sbjct 22840 CTTTGCA-TTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTGTTAATAATGCTTTTTAA 22898 Query 1726 TTAGGTATTGCGGTGTGACATCATCGATGACGTTATACTCCGCATCGTTTGAGTATACCC 1785 ||| || | || | ||| || ||||| ||||||||| | ||||| |||||||| Sbjct 22899 TTAAATAATTCGAAGGGACGTC-TCGATAACGTTATAC-CTGCATCATTTGAGTACGTTT 22956 Query 1786 TTGGGTTGAAGTCCAGATGTCCGCTTAGATAGTTATGCGGGCCTAATGCACGAGCCCA 1843 | || || || | | || ||| ||||| || |||||||||| |||||| || Sbjct 22957 TCAAATTAAAATCAATAAATCTCATTATGTAGTTGTGTGGGCCTAATGAACGAGCTCA 23014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8420783394660