Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_028262.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq3439 111 3e-21 seq3283 111 3e-21 seq22495 102 1e-18 seq35612 100 5e-18 seq4104 100 5e-18 seq442 95.1 2e-16 seq30129 93.3 7e-16 seq953 86.0 1e-13 seq3059 84.2 4e-13 seq80468 78.8 2e-11 seq5745 78.8 2e-11 >seq3439 Length=62978 Score = 111 bits (122), Expect = 3e-21 Identities = 187/269 (70%), Gaps = 10/269 (4%) Strand=Plus/Minus Query 1665 ATCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1724 ||| |||||| ||||||| | | | ||||| ||||||| || | |||| | ||||| Sbjct 991 ATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 932 Query 1725 GCCACCTTTAATTTGAACTGGCTTTCCGTACTTAGTGTTGCTTTGCCAGTCTCTTTGGGC 1784 || ||||||||||||||||| ||||||||||| | |||| ||||| | || || || Sbjct 931 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGC 872 Query 1785 CCCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGATCTACGTCATCAATGAC 1838 || | ||| | || | | |||| ||| || | ||| || ||||| ||||| Sbjct 871 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812 Query 1839 GTTGTACCAGGCATCATTATTGTATACCTTT--GGACTAAGGTCTAGATGTCCACACAAA 1896 ||| ||||| ||||||| ||| ||| ||| | | ||| || | | ||| | Sbjct 811 GTTATACCATGCATCAT--TTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATG 754 Query 1897 TAATTATGTGGTCCCAATGATCTAGCCCA 1925 || || ||||| || ||||| | |||||| Sbjct 753 TAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq3283 Length=49157 Score = 111 bits (122), Expect = 3e-21 Identities = 187/269 (70%), Gaps = 10/269 (4%) Strand=Plus/Minus Query 1665 ATCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1724 |||||||||| ||||||| | || ||||| |||||||| || | |||| | ||||| Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1725 GCCACCTTTAATTTGAACTGGCTTTCCGTACTTAGTGTTGCTTTGCCAGTCTCTTTGGGC 1784 || ||||||||||||||||| || |||||||| | ||| ||||| | || || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1785 CCCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGATCTACGTCATCAATGAC 1838 || | ||| | || | | |||| ||| || | ||| ||||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1839 GTTGTACCAGGCATCATTATTGTATACCTTT--GGACTAAGGTCTAGATGTCCACACAAA 1896 ||| ||||| ||||||| ||| ||| ||| | | ||| || | | ||| | Sbjct 2131 GTTATACCATGCATCAT--TTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATG 2074 Query 1897 TAATTATGTGGTCCCAATGATCTAGCCCA 1925 || || ||||| || ||||| | |||||| Sbjct 2073 TAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq22495 Length=567 Score = 102 bits (112), Expect = 1e-18 Identities = 141/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1665 ATCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1724 ||| ||||| ||||||| | ||| ||||| |||||||| || | |||| | |||| Sbjct 398 ATCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAAT 339 Query 1725 GCCACCTTTAATTTGAACTGGCTTTCCGTACTTAGTGTTGCTTTGCCAGTCTCTTTGGGC 1784 || | ||||||||||||||| ||||||||||| | ||| ||||||| | || || Sbjct 338 CCCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGC 279 Query 1785 CCCCATGAATTCTTTAAAGTGCT------TTAGGTAGTGGGGATCTACGTCATCAATGAC 1838 || | ||| | || | | |||| ||| || | ||| | |||||| ||||| Sbjct 278 GCCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGAC 219 Query 1839 GTTGTACCAGGCATCATT 1856 ||| ||||| |||||||| Sbjct 218 GTTATACCATGCATCATT 201 >seq35612 Length=1588 Score = 100 bits (110), Expect = 5e-18 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1665 ATCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1724 ||||||||| ||||||| | ||| ||||| |||||||| || | |||| | ||||| Sbjct 1479 ATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1538 Query 1725 GCCACCTTTAATTTGAACTGGCTTTCCGTACTTAGTGTTGCTTTGCCA 1772 ||| ||||||||||||||||| ||||||||||| | |||| ||||| Sbjct 1539 GCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq4104 Length=64936 Score = 100 bits (110), Expect = 5e-18 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 1665 ATCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1724 |||||||||| ||||||| | ||| |||||| |||||||| || | |||| | ||||| Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799 Query 1725 GCCACCTTTAATTTGAACTGGCTTTCCGTACTT 1757 || ||||||||||||||||| ||||||||||| Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 >seq442 Length=237535 Score = 95.1 bits (104), Expect = 2e-16 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 1665 ATCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1724 ||||||||| ||||||| | |||| ||||| |||||||| || |||| | ||||| Sbjct 22750 ATCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAAT 22809 Query 1725 GCCACCTTTAATTTGAACTGGCTTTCCGTACTTAGTGTTGCTTTGCCAGTCTCTTTGGGC 1784 | |||||||||||||||| ||||||||||| | ||| ||| ||| || ||| || Sbjct 22810 CTCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGC 22869 Query 1785 CCCCATGAATTCTTTAAAGTGCTTT 1809 || | ||| | || | | |||||| Sbjct 22870 GCCTACGAACTGTTAATAATGCTTT 22894 >seq30129 Length=3650 Score = 93.3 bits (102), Expect = 7e-16 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1665 ATCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1724 |||||||||| ||| ||| | ||| ||||| |||||||| || | |||| | ||||| Sbjct 2343 ATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2402 Query 1725 GCCACCTTTAATTTGAACTGGCTTTCCGTACTTAGTGTTGCTTTGCCAGTCTCTTTGGGC 1784 || ||||||||||||||| | ||||||||||| | ||| ||||| | || || || Sbjct 2403 CCCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2462 Query 1785 CCCCATGAATTCTTTAAAGTGCTT 1808 || | ||| | || | | ||||| Sbjct 2463 GCCTACGAACTGTTGATAATGCTT 2486 >seq953 Length=224861 Score = 86.0 bits (94), Expect = 1e-13 Identities = 166/243 (68%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 1621 GCATTTTTTAAAGCCCAGGCTTTC-AGTGCGCTATTCTTCTCTTCATCCAAGAACTCTTT 1679 ||||||| ||||| ||| | |||| | | | ||| ||| ||| ||||| ||| Sbjct 1768 GCATTTTGTAAAGTCCAAGTTTTCCAATATGA-ATTGGAATCTAAATCTAAGAATGTTTT 1826 Query 1680 ATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTG 1739 |||| | ||| ||||| |||||||| | | |||| | ||||| || ||||||||||| Sbjct 1827 ATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTG 1886 Query 1740 AACTGGCTTTCCGTACTTAGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTT 1799 || || ||||||||||| | ||| ||||| | || || | || | ||| | || Sbjct 1887 AATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTG 1946 Query 1800 AAAGTGCT------TTAGGTAGTGGGGATCTACGTCATCAATGACGTTGTACCAGGCATC 1853 | | | || ||| || | ||| ||||| || || ||||| ||||| ||||| Sbjct 1947 ATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATC 2006 Query 1854 ATT 1856 ||| Sbjct 2007 ATT 2009 >seq3059 Length=182465 Score = 84.2 bits (92), Expect = 4e-13 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1665 ATCCAAGAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1724 |||||||||| ||||| | | ||| ||||| |||||||| || | |||| | ||||| Sbjct 20447 ATCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20388 Query 1725 GCCACCTTTAATTTGAACTGGCTTTCCGTACTTAGTGTTGCTTTGCCAGTCTCTTTGGGC 1784 || ||||||||||||| ||| |||||||| || | ||| | ||||| | || || Sbjct 20387 CCCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGC 20328 Query 1785 CCCCATGAATTCTTTAAAGTGCTT 1808 || | ||| | || | | ||||| Sbjct 20327 GCCTACGAACTGTTGATAATGCTT 20304 >seq80468 Length=4946 Score = 78.8 bits (86), Expect = 2e-11 Identities = 106/145 (73%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 1621 GCATTTTTTAAAGCCCAGGCTTTC-AGTGCGCTATTCTTCTCTTCATCCAAGAACTCTTT 1679 ||||||| ||||| ||| | |||| | | | ||| ||| || |||||| ||| Sbjct 4194 GCATTTTGTAAAGTCCAAGTTTTCCAATATGA-ATTGGACTCCATATTCAAGAATGTTTT 4252 Query 1680 ATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATGCCACCTTTAATTTG 1739 |||| | ||| ||||| ||||||| || | |||| | ||||| || |||||||| || Sbjct 4253 ATAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAATTCCGCCTTTAATCTG 4312 Query 1740 AACTGGCTTTCCGTACTTAGTGTTG 1764 ||| || ||||||||||| || ||| Sbjct 4313 AACAGGTTTTCCGTACTTTGTATTG 4337 >seq5745 Length=45059 Score = 78.8 bits (86), Expect = 2e-11 Identities = 141/205 (69%), Gaps = 17/205 (8%) Strand=Plus/Plus Query 1665 ATCCAAGAACTCTTTATAGCTTGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1721 ||| |||||| ||||||| | ||| || || |||||||| | | |||| || Sbjct 43507 ATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGG 43566 Query 1722 AATGCCACCTTTAATTTGAACTGGCTTTCCGTACTTAGTGTTGCTTTGCCAGTCTCTTTG 1781 ||| |||||||||||||||||||| || |||||||| | || ||||| | | ||| Sbjct 43567 AATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTG 43626 Query 1782 GGCCCCCATGAATTCTT--TAAAGTGCTTTAGGTA--------GTGGGGATCTACGTCAT 1831 || || ||||| | || ||| || |||| || | ||||| ||||| Sbjct 43627 TGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGAT----GTCAT 43682 Query 1832 CAATGACGTTGTACCAGGCATCATT 1856 |||||||||| ||||| || || || Sbjct 43683 CAATGACGTTATACCATGCGTCGTT 43707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8695721652800