Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_029105.1 Length=2700 Score E Sequences producing significant alignments: (Bits) Value seq33 111 3e-21 seq77518 95.1 2e-16 seq5745 89.7 9e-15 seq4295 82.4 1e-12 seq3439 78.8 2e-11 >seq33 Length=454124 Score = 111 bits (122), Expect = 3e-21 Identities = 241/357 (68%), Gaps = 8/357 (2%) Strand=Plus/Minus Query 1536 TAGAGGGGGGAGTCGAGGAAGACGAACGTCGCATTATGTAATGTCCAGGCTTTGAGAGCT 1595 || || |||| ||||| |||| ||| ||||| ||||| ||||| | ||| | | Sbjct 403409 TATAGAGGGGTGTCGATGAAGTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTT 403350 Query 1596 GAGTTTTCAGATTTGTCGAGGAAATCTTTATAA--CTAGCCCCCTCGCCTGGATTGCACA 1653 || ||| | | | |||| ||| |||||||| | | | | || |||||||| | Sbjct 403349 GAATTTGAATCTATATCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAA 403290 Query 1654 GCACGATTGAAGGAACCCCGCCTTTAATTTGAACAGGCTTTCCGTACTTGCAATTGGATT 1713 ||||||| | |||| ||||| |||||||||||| || ||||||||||| ||| || | Sbjct 403289 GCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACT 403230 Query 1714 GCCAGT--CCCTTTGGGCC-CCGATAAGTTCCTTCCAGTGCTTTAGCTTTAGATAATGCG 1770 |||||| | || | ||| ||| ||| | | || ||| ||| |||| | Sbjct 403229 GCCAGTTGCACTGTACGCCTACGAACTGTTGAT---AATGATTTTTAATTAAATAAGCTG 403173 Query 1771 GGCTTACATCATCAATGACGTTATACTCCACATTGTTCGAGTAAACCCTAGAATTGAAGT 1830 | || |||||||||||||||||| | | | ||||||||| || ||||| || | Sbjct 403172 GAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCAAAT 403113 Query 1831 CTAGGTGCCCGCTCAAATAATTATGTGGGCCTAACGCTCGAGCCCACATCGTCTTTC 1887 | | || | | ||||||||||| || |||| || ||||| | || |||| Sbjct 403112 CCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTTC 403056 >seq77518 Length=14724 Score = 95.1 bits (104), Expect = 2e-16 Identities = 230/349 (66%), Gaps = 11/349 (3%) Strand=Plus/Minus Query 1535 ATAGAGGGGGGAGTCGAGGAAGACGAACGTCGCATTATGTAATGTCCAGGCTTTGAGAGC 1594 |||||| ||| ||||| |||| ||| ||||| ||||| ||||| | ||| | Sbjct 2509 ATAGAGAAGGGTGTCGATGAAGTGGAATTCTGCATTTTGTAAAGTCCACGATTTTCAATT 2450 Query 1595 TGAGTTTTCAGATTTGTCGAGGAAATCTTTATAA-------CTAGCCCCCTCGCCTGGAT 1647 ||| ||| | | || | ||| |||||||| || | |||| | |||| Sbjct 2449 TGAATTTGAATCTAAATCCAAGAATGCTTTATAAGATAAATCTGGACCCC----CAGGAT 2394 Query 1648 TGCACAGCACGATTGAAGGAACCCCGCCTTTAATTTGAACAGGCTTTCCGTACTTGCAAT 1707 |||| || ||||| | |||| |||||||||||||||||| | ||| ||||||| || Sbjct 2393 TGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCAT 2334 Query 1708 TGGATTGCCAGTCCCTTTGGGCCCCGATAAGTTCCTTCCAGTGCTTTAGCTTTAGATAAT 1767 | || || |||| | ||| || || | | | | | |||||| ||| |||| Sbjct 2333 TTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAG 2274 Query 1768 GCGGGCTTACATCATCAATGACGTTATACTCCACATTGTTCGAGTAAACCCTAGAATTGA 1827 || ||||||||||||||||||||| | | | ||||||||| | |||| | Sbjct 2273 CTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATTCA 2214 Query 1828 AGTCTAGGTGCCCGCTCAAATAATTATGTGGGCCTAACGCTCGAGCCCA 1876 | || | || | | |||||||||||| || ||| || ||||| Sbjct 2213 AATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCA 2165 >seq5745 Length=45059 Score = 89.7 bits (98), Expect = 9e-15 Identities = 242/371 (65%), Gaps = 11/371 (3%) Strand=Plus/Plus Query 1535 ATAGAGGGGGGAGTCGAGGAAGACGAACGTCGCATTATGTAATGTCCAGGCTTTGAGAGC 1594 |||||| |||| ||||| |||| || ||||| ||||| ||| | | ||| | Sbjct 43432 ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACGATTTCTAATT 43491 Query 1595 TGAGTTTTCAGATTTGTCGAGGAAATCTTTATAA-------CTAGCCCCCTCGCCTGGAT 1647 ||| ||| | | | || | ||| |||||||| || | |||| | |||| Sbjct 43492 TGAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCCC----CAGGAT 43547 Query 1648 TGCACAGCACGATTGAAGGAACCCCGCCTTTAATTTGAACAGGCTTTCCGTACTTGCAAT 1707 |||| | |||||| | |||| ||| |||||||||||||| || || |||||||| || Sbjct 43548 TGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCAT 43607 Query 1708 TGGATTGCCAGTCCCTTTGGGCCCCGATAAGTTCCTTCCAGTGCTTTAGCTTTAGATAAT 1767 | || ||||| | | ||| || || || | | | | || ||| ||| |||| Sbjct 43608 TTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAG 43667 Query 1768 GCGGGCTTACATCATCAATGACGTTATACTCCACATTGTTCGAGTAAACCCTAGAATTGA 1827 || | |||||||||||||||||| | | |||||| || | ||||| | Sbjct 43668 CTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCA 43727 Query 1828 AGTCTAGGTGCCCGCTCAAATAATTATGTGGGCCTAACGCTCGAGCCCACATCGTCTTTC 1887 | || | || | | |||||||||||| || |||| || ||||| | || || | Sbjct 43728 AATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTAC 43787 Query 1888 CCGTTCGAGAA 1898 | ||| |||| Sbjct 43788 CGATTCTAGAA 43798 >seq4295 Length=67413 Score = 82.4 bits (90), Expect = 1e-12 Identities = 229/350 (65%), Gaps = 5/350 (1%) Strand=Plus/Minus Query 1541 GGGGGAGTCGAGGAAGACGAACGTCGCATTATGTAATGTCCAGGCTTTGAGAGCTGAGTT 1600 ||||| |||| ||||| ||| ||||| ||||||||| || | || | | || Sbjct 46949 GGGGGTGTCGGCGAAGAAGAATTCTGCATTTCCTAATGTCCATTTCTTCAAAGTTAAATT 46890 Query 1601 TTCAGATTTGTCGAGGAAATCTTTATAACTAGCCCCCTCG----CCTGGATTGCACAGCA 1656 | | || ||||| ||| ||||||| | | | | || | | ||||||| | |||| Sbjct 46889 TATATCTTGTTCGAGAAAAGCTTTATA-CGAACACTCTGGTGTCCTTGGATTGTAGAGCA 46831 Query 1657 CGATTGAAGGAACCCCGCCTTTAATTTGAACAGGCTTTCCGTACTTGCAATTGGATTGCC 1716 ||||| | || | || |||||||||||| | || || ||||||||| ||| || | || Sbjct 46830 CGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTGGCATTTGAGTTCC 46771 Query 1717 AGTCCCTTTGGGCCCCGATAAGTTCCTTCCAGTGCTTTAGCTTTAGATAATGCGGGCTTA 1776 | | |||||| | || || || || || | ||| || | ||| | || Sbjct 46770 AATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAATAGGATAGAGATA 46711 Query 1777 CATCATCAATGACGTTATACTCCACATTGTTCGAGTAAACCCTAGAATTGAAGTCTAGGT 1836 | ||||| || ||||| ||| |||| ||||| | | ||||| || || | | Sbjct 46710 CGTCATCTATAACGTTGTACCATGCATTATTCGAAAATGATTTCGAATTAAAATCCATGA 46651 Query 1837 GCCCGCTCAAATAATTATGTGGGCCTAACGCTCGAGCCCACATCGTCTTT 1886 || | | || |||||||||| ||| | || ||||| || |||||| Sbjct 46650 AGCCCATTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTGTCTTT 46601 >seq3439 Length=62978 Score = 78.8 bits (86), Expect = 2e-11 Identities = 160/235 (68%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 1645 GATTGCACAGCACGATTGAAGGAACCCCGCCTTTAATTTGAACAGGCTTTCCGTACTTGC 1704 ||||||| || ||||| |||| |||||||||||||||||| || ||||||||||| Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1705 AATTGGATTGCCA--GTCCCTTTGGGCC-CCGATAAGTTCCTTCCAGTGCTTTAGCTTTA 1761 |||| ||||| || || || ||| ||| ||| | | ||||| ||| Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGAT---AATGCTTCTTAATTA 840 Query 1762 GATAATGCGGGCTTACATCATCAATGACGTTATACTCCACATTGTTCGAGTAAACCCTAG 1821 ||||| ||| |||||||| |||||||||||| ||| || ||||| | | Sbjct 839 AATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGG 780 Query 1822 AATTGAAGTCTAGGTGCCCGCTCAAATAATTATGTGGGCCTAACGCTCGAGCCCA 1876 |||| || || | || | | || || ||||||||||| | |||||||| Sbjct 779 AATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8523086002340