Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_029648.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq3283 113 8e-22 seq5745 109 1e-20 seq33 109 1e-20 seq3439 107 3e-20 seq77518 104 4e-19 seq1993 104 4e-19 seq22495 96.9 6e-17 seq35612 86.0 1e-13 seq54129 84.2 4e-13 seq30129 84.2 4e-13 seq4104 80.6 5e-12 seq442 80.6 5e-12 seq3059 78.8 2e-11 >seq3283 Length=49157 Score = 113 bits (124), Expect = 8e-22 Identities = 168/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1677 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1736 || ||||||||||| || | ||| |||| ||||||||||||||||||||||| |||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1737 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1791 ||||||| |||| ||||| | | || || || | ||||| || | | || | Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1792 -TGAGAAAATGCGGGTCGACGTCATCAATGACATTATACCAGGCGTCGTTACTGTAGACC 1850 | | | ||| ||| |||||| || ||||| |||||||| || || || ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1851 TTGGGACTCAGGTCCAGATGTCCACACAAATAGTTATGTGGTCCCAATGACCTAGCCCA 1909 |||| | | | |||| | ||| | ||||| ||||| || ||||| | |||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq5745 Length=45059 Score = 109 bits (120), Expect = 1e-20 Identities = 126/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1680 CCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1739 ||||||||||| | | ||| ||| ||||| ||||||||||||||||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1740 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAGTGTTTGA--- 1794 |||| || || ||||| | | ||| || || ||||||| || ||| || ||| | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1795 GAAAATGC-GGGTCGACGTCATCAATGACATTATACCAGGCGTCGTT 1840 || | || || || |||||||||||| |||||||| |||||||| Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq33 Length=454124 Score = 109 bits (120), Expect = 1e-20 Identities = 127/167 (76%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1680 CCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1739 ||||||||||| || | ||| ||| ||||||| ||||||||||||||| || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1740 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAGA 1796 |||| || || ||||||| | || | || | ||||| || ||| | | ||| | Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1797 AAAT--GC-GGGTCGACGTCATCAATGACATTATACCAGGCGTCGTT 1840 |||| || || ||||||||||||||| |||||||| |||||||| Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTT 403136 >seq3439 Length=62978 Score = 107 bits (118), Expect = 3e-20 Identities = 167/239 (70%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1677 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1736 || ||| ||||||| || | ||| |||| ||||||||||||||||||||||| || ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1737 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1791 ||||||| ||||| ||||| | | || || || | ||||| || | | || | Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1792 -TGAGAAAATGCGGGTCGACGTCATCAATGACATTATACCAGGCGTCGTTACTGTAGACC 1850 | | | ||| ||| ||| ||||| ||||| |||||||| || || || ||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 784 Query 1851 TTGGGACTCAGGTCCAGATGTCCACACAAATAGTTATGTGGTCCCAATGACCTAGCCCA 1909 |||| | | | |||| | ||| | ||||| ||||| || ||||| | |||||| Sbjct 783 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq77518 Length=14724 Score = 104 bits (114), Expect = 4e-19 Identities = 126/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1680 CCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1739 ||||||||||| || | ||| ||| |||||||||||||||||||||| || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1740 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAGA 1796 |||| || || || |||| | ||| || || | ||||| || ||| | | ||| | Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1797 AAAT--GC-GGGTCGACGTCATCAATGACATTATACCAGGCGTCGTT 1840 |||| || || ||| ||||||||||| |||||||| |||||||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq1993 Length=81530 Score = 104 bits (114), Expect = 4e-19 Identities = 126/167 (75%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1680 CCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTAC 1739 ||||||||||| || | ||| ||| |||||| |||||||||||||||| || |||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1740 TTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG-TGTTTGAGA 1796 |||| || || ||||| | | ||| || | | ||||| || ||| | | ||| | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1797 AAAT--GC-GGGTCGACGTCATCAATGACATTATACCAGGCGTCGTT 1840 |||| || || ||||||||||||||| |||||||| |||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq22495 Length=567 Score = 96.9 bits (106), Expect = 6e-17 Identities = 123/170 (72%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1677 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1736 || ||||||||||| || | ||| || | ||||||| ||||||||||||||| || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1737 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTT----- 1791 ||||||| |||| ||||||| | || || || | ||||| || | | || | Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1792 -TGAGAAAATGCGGGTCGACGTCATCAATGACATTATACCAGGCGTCGTT 1840 | | | ||| ||| || |||||| ||||| |||||||| || || || Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq35612 Length=1588 Score = 86.0 bits (94), Expect = 1e-13 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1677 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1736 || ||||||||||| || | ||| |||| || |||||||||||||||||||| || ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1737 TACTTTGTGTTGGATTGCCA 1756 ||||||| ||||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 >seq54129 Length=2260 Score = 84.2 bits (92), Expect = 4e-13 Identities = 117/161 (73%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1677 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1736 || ||||||||||| || | ||| |||| ||||||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1737 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT--TAAAG--TGTT- 1791 ||||||| |||| || |||| || || || | ||||| || ||| | | || Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1792 -TGAGAAAATGCGGGTCGACGTCATCAATGACATTATACCA 1831 | | | ||| ||| ||| || || ||||| |||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCA 2100 >seq30129 Length=3650 Score = 84.2 bits (92), Expect = 4e-13 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 1677 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1736 || ||||||||||| || | ||| |||| ||||||||||||||||||||| | || ||| Sbjct 2371 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCG 2430 Query 1737 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT 1782 ||||||| |||| ||||| | | || || || | ||||| || Sbjct 2431 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTT 2476 >seq4104 Length=64936 Score = 80.6 bits (88), Expect = 5e-12 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1677 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1736 || ||||||||||| || | ||| |||| ||||||||||||||||||||||| || ||| Sbjct 20830 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 20771 Query 1737 TACTTTG 1743 ||||||| Sbjct 20770 TACTTTG 20764 >seq442 Length=237535 Score = 80.6 bits (88), Expect = 5e-12 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 1674 TTTGGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTC 1733 || || ||||||||||| || ||| |||| ||| |||||||||||||||||| || Sbjct 22775 TTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAATTTGAACTGATTTT 22834 Query 1734 CCGTACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT 1782 |||||||||| |||| ||| ||| | ||| || || | ||||| || Sbjct 22835 CCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTGTT 22883 >seq3059 Length=182465 Score = 78.8 bits (86), Expect = 2e-11 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 1677 GGACCAGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTCCCG 1736 || ||||||||||| || | ||| |||| ||||||||||||||||||| ||| || ||| Sbjct 20419 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 20360 Query 1737 TACTTTGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTT 1782 || |||| |||| | ||||| | || || || | ||||| || Sbjct 20359 TAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTT 20314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8676539913860