Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_029994.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value seq77518 82.4 1e-12 seq5745 82.4 1e-12 seq3283 82.4 1e-12 seq3439 78.8 2e-11 >seq77518 Length=14724 Score = 82.4 bits (90), Expect = 1e-12 Identities = 118/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1690 CCTGGATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTAC 1749 || |||||||| || | ||| ||| || || ||||||||||||| || ||| ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1750 TTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCT------TT 1803 || | ||| || |||| | ||| || || | ||||| | | | |||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1804 AAGTAGTGGGGATCCACATCATCAATGACGTTGTACCAAGCGTCGTT 1850 || || ||| ||||||||||||||||| ||||| |||||||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq5745 Length=45059 Score = 82.4 bits (90), Expect = 1e-12 Identities = 121/171 (71%), Gaps = 14/171 (8%) Strand=Plus/Plus Query 1690 CCTGGATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTAC 1749 || |||||||| | | ||| ||| || |||||||||||||||| |||||| |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1750 TTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCCT--TAAAGTGCTTTAAGT 1807 || | ||| ||||| | | ||| || || ||||||| | ||| || ||||| | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1808 A--------GTGGGGATCCACATCATCAATGACGTTGTACCAAGCGTCGTT 1850 | | ||||| |||||||||||||| ||||| |||||||| Sbjct 43661 AAATAAGCTGGAGGGAT----GTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq3283 Length=49157 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1687 GGGCCTGGATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCG 1746 || || |||||||| || | ||| |||| || || ||||||||||||| |||||||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1747 TACTTGGTATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCT----- 1801 ||||| | |||| ||||| | | || || || | ||||| | | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1802 -TTAAGTAGTGGGGATCCACATCATCAATGACGTTGTACCAAGCGTCGTT 1850 |||| || | ||| || || || |||||||| ||||| || || || Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT 2114 >seq3439 Length=62978 Score = 78.8 bits (86), Expect = 2e-11 Identities = 115/163 (71%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 1694 GATTGCAGAGGAAGATTGTTGGGATACCACCTTTAATTTGAATTGGTTTCCCGTACTTGG 1753 ||||||| || | ||| |||| || || ||||||||||||| |||||| |||||||| | Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1754 TATTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGCT------TTAAGT 1807 ||| ||||| | | || || || | ||||| | | | |||| |||| | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1808 AGTGGGGATCCACATCATCAATGACGTTGTACCAAGCGTCGTT 1850 | | ||| |||||||| |||||||| ||||| || || || Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT 794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8721297304720