Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_030403.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq3439 109 1e-20 seq22495 104 4e-19 seq3283 104 4e-19 seq33 102 1e-18 seq54129 95.1 2e-16 seq953 95.1 2e-16 seq77518 87.8 3e-14 seq5745 86.0 1e-13 seq3059 86.0 1e-13 seq815 86.0 1e-13 seq80468 80.6 5e-12 seq35612 80.6 5e-12 seq20728 80.6 5e-12 seq442 80.6 5e-12 seq30129 78.8 2e-11 >seq3439 Length=62978 Score = 109 bits (120), Expect = 1e-20 Identities = 124/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1696 CCAGGATTGCACAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATCGGCTTTCCGTAC 1755 ||| ||||||| || | |||| | ||||| |||||||||||||||| || ||||||||| Sbjct 960 CCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTAC 901 Query 1756 TTTGTGTTGCTTTGCCAGTCCCGCTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1809 |||| |||| ||||| | ||||| || || | ||| | | | | |||| || Sbjct 900 TTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATT 841 Query 1810 AGATAGTGCGGGTCGACGTCATCAATGACGTTATACCATGCTTCGTT 1856 | ||| | ||| ||| ||||| ||||||||||||||||| || || Sbjct 840 AAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATT 794 >seq22495 Length=567 Score = 104 bits (114), Expect = 4e-19 Identities = 123/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1696 CCAGGATTGCACAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATCGGCTTTCCGTAC 1755 ||||||||||| || | |||| | |||| |||| ||||||||||| || ||||||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1756 TTTGTGTTGCTTTGCCAGTCCCGCTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1809 |||| ||| ||||||| ||||| || || | ||| | | | | |||| || Sbjct 307 TTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAATT 248 Query 1810 AGATAGTGCGGGTCGACGTCATCAATGACGTTATACCATGCTTCGTT 1856 | ||| | ||| || |||||| ||||||||||||||||| || || Sbjct 247 AAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATT 201 >seq3283 Length=49157 Score = 104 bits (114), Expect = 4e-19 Identities = 123/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1696 CCAGGATTGCACAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATCGGCTTTCCGTAC 1755 ||||||||||| || | |||| | ||||| |||||||||||||||| || || |||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1756 TTTGTGTTGCTTTGCCAGTCCCGCTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1809 |||| ||| ||||| | ||||| || || | ||| | | | | |||| || Sbjct 2220 TTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATT 2161 Query 1810 AGATAGTGCGGGTCGACGTCATCAATGACGTTATACCATGCTTCGTT 1856 | ||| | ||| |||||| || ||||||||||||||||| || || Sbjct 2160 AAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATT 2114 >seq33 Length=454124 Score = 102 bits (112), Expect = 1e-18 Identities = 217/322 (67%), Gaps = 8/322 (2%) Strand=Plus/Minus Query 1621 GCATTCTTTAATGCCCAAGCTTTCAAAGCTGCATTCTTTTCTTCGTCCAAGAAATCTTTA 1680 ||||||| ||| | ||| | |||| || || ||| ||| || ||||| ||||| Sbjct 403379 GCATTCTGTAAAGTCCACGATTTCCAATTTGAATTTGAATCTATATCGAAGAACGCTTTA 403320 Query 1681 TACGAGGACG-TCGACCC-AGGATTGCACAGGAAGATAGTGGGAATTCCGCCTTTAATTT 1738 || || || | ||||| ||||||||| || | |||| ||||| |||| |||||||| Sbjct 403319 TAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTT 403260 Query 1739 GAATCGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCGCTGGGCCCCCATGAATTCCT 1798 ||| || ||||||||||||| || ||||||| | ||| | || | ||| | | Sbjct 403259 GAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTT 403200 Query 1799 TAAAGTGCT------TTAGATAGTGCGGGTCGACGTCATCAATGACGTTATACCATGCTT 1852 | | || | ||| ||| || |||||||||||||||||||||||| || | Sbjct 403199 GATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGT 403140 Query 1853 CGTTACTGTACACCTTTGGGCTTAGGTCCAAATGACCGCACAGATAATTGTGCGGACCCA 1912 |||| ||| | | | | |||| | || | ||||| || ||||||| Sbjct 403139 CGTTCGAGTATGTTCTCGAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCA 403080 Query 1913 ACGAACGGGCCCAACAAGTTTT 1934 ||||||| |||||| ||||| Sbjct 403079 ACGAACGTGCCCAAACTGTTTT 403058 >seq54129 Length=2260 Score = 95.1 bits (104), Expect = 2e-16 Identities = 121/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1696 CCAGGATTGCACAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATCGGCTTTCCGTAC 1755 ||||||||||| || | |||| | ||||| ||||||||||||||||| || ||||||||| Sbjct 2257 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAC 2198 Query 1756 TTTGTGTTGCTTTGCCAGTCCCGCTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1809 |||| ||| || |||| |||| || || | ||| | | | |||| || Sbjct 2197 TTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAATT 2138 Query 1810 AGATAGTGCGGGTCGACGTCATCAATGACGTTATACCATGCTTCGTT 1856 | ||| | ||| ||| || || ||||||||||||||| | || || Sbjct 2137 AAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq953 Length=224861 Score = 95.1 bits (104), Expect = 2e-16 Identities = 166/242 (69%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 1621 GCATTCTTTAATGCCCAAGCTTTCAAAGCTGCATTCTTTTCTTCGTCCAAGAAATCTTTA 1680 ||||| | ||| | ||||| |||| || || ||| ||| || ||||| |||| Sbjct 1768 GCATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGAATCTAAATCTAAGAATGTTTTA 1827 Query 1681 TACGAGGACGTCGACCCAGGATTGCACAGGAAGATAGTGGGAATTCCGCCTTTAATTTGA 1740 || || | | ||||||||||| | | |||| | ||||| ||||||||||||||| Sbjct 1828 TAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAATTTGA 1887 Query 1741 ATCGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCGCTGGGCCCCCATGAATTCCTTA 1800 || | ||||||||||||| ||| ||||| | ||||| | || | ||| | | | Sbjct 1888 ATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTGTTGA 1947 Query 1801 AAGTGCT------TTAGATAGTGCGGGTCGACGTCATCAATGACGTTATACCATGCTTCG 1854 | | || ||| ||| | ||| |||||| || || |||||||||||||| || Sbjct 1948 TAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGCATCA 2007 Query 1855 TT 1856 || Sbjct 2008 TT 2009 >seq77518 Length=14724 Score = 87.8 bits (96), Expect = 3e-14 Identities = 189/281 (67%), Gaps = 9/281 (3%) Strand=Plus/Minus Query 1666 TCCAAGAAATCTTTATACGAGGACG-TCGACCC--AGGATTGCACAGGAAGATAGTGGGA 1722 |||||||| ||||||| || | | ||||| ||||||||| || | |||| ||| Sbjct 2433 TCCAAGAATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGA 2374 Query 1723 ATTCCGCCTTTAATTTGAATCGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCGCTGG 1782 || |||||||||||||||| | ||| ||||||||| || || |||| || || Sbjct 2373 ATCCCGCCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGT 2314 Query 1783 GCCCCCATGAATTCCTTAAAGTGCT------TTAGATAGTGCGGGTCGACGTCATCAATG 1836 || || | ||| | | | | |||| ||| ||| || ||| ||||||||| Sbjct 2313 GCTCCTACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATG 2254 Query 1837 ACGTTATACCATGCTTCGTTACTGTACACCTTTGGGCTTAGGTCCAAATGACCGCACAGA 1896 ||||||||||| || ||||| ||| || | | |||| | || | | Sbjct 2253 ACGTTATACCACGCGTCGTTCGAGTATGTTTTCAAATTCAAATCCATAAAGCCCATTATA 2194 Query 1897 TAATTGTGCGGACCCAACGAACGGGCCCAACAAGTTTTGCC 1937 ||||| || ||||||||| |||| |||||| ||||| || Sbjct 2193 TAATTATGTGGACCCAACTAACGTGCCCAAACTGTTTTACC 2153 >seq5745 Length=45059 Score = 86.0 bits (94), Expect = 1e-13 Identities = 168/249 (67%), Gaps = 6/249 (2%) Strand=Plus/Plus Query 1695 CCCAGGATTGCACAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATCGGCTTTCCGTA 1754 |||||||||||| | | |||| ||||| || ||||||||||||| || || ||||| Sbjct 43540 CCCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTA 43599 Query 1755 CTTTGTGTTGCTTTGCCAGTCCCGCTGGGCCCCCATGAATTCCTTAAAGTGCT------T 1808 ||||| || ||||| | | || || || ||||| | | | | || | | Sbjct 43600 CTTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1809 TAGATAGTGCGGGTCGACGTCATCAATGACGTTATACCATGCTTCGTTACTGTACACCTT 1868 || ||| || || |||||||||||||||||||||||| ||||| || || Sbjct 43660 TAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTT 43719 Query 1869 TGGGCTTAGGTCCAAATGACCGCACAGATAATTGTGCGGACCCAACGAACGGGCCCAACA 1928 | | | |||| | || | |||||| || |||||||||||||| |||||| Sbjct 43720 CGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAAC 43779 Query 1929 AGTTTTGCC 1937 ||||| || Sbjct 43780 TGTTTTACC 43788 >seq3059 Length=182465 Score = 86.0 bits (94), Expect = 1e-13 Identities = 107/147 (73%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 1696 CCAGGATTGCACAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATCGGCTTTCCGTAC 1755 ||||||||||| || | |||| | ||||| ||||||||||||||||| || |||||||| Sbjct 20416 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAA 20357 Query 1756 TTTGTGTTGCTTTGCCAGTCCCGCTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1809 |||| ||| | ||||| ||||| || || | ||| | | | | |||| || Sbjct 20356 TTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATT 20297 Query 1810 AGATAGTGCGGGTCGACGTCATCAATG 1836 | ||| | ||| |||||| |||||| Sbjct 20296 AAATAATTCGGAGGGACGTCGTCAATG 20270 >seq815 Length=151552 Score = 86.0 bits (94), Expect = 1e-13 Identities = 119/167 (71%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1696 CCAGGATTGCACAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATCGGCTTTCCGTAC 1755 ||||||||||| || | ||| | ||||| ||||||||||||||| || ||| ||||| Sbjct 85421 CCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCGTAC 85362 Query 1756 TTTGTGTTGCTTTGCCAGTCCCGCTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1809 |||| ||| | ||||| ||||| || || | ||| | | | | | || || Sbjct 85361 TTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAAATT 85302 Query 1810 AGATAGTGCGGGTCGACGTCATCAATGACGTTATACCATGCTTCGTT 1856 | ||| | | | |||||| || ||||||||||||||||| || || Sbjct 85301 AAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATT 85255 >seq80468 Length=4946 Score = 80.6 bits (88), Expect = 5e-12 Identities = 115/161 (71%), Gaps = 7/161 (4%) Strand=Plus/Plus Query 1696 CCAGGATTGCACAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATCGGCTTTCCGTAC 1755 ||| ||||||| || | |||| | ||||||||||||||||| |||| || ||||||||| Sbjct 4269 CCAAGATTGCAAAGTACGATACTTGGAATTCCGCCTTTAATCTGAACAGGTTTTCCGTAC 4328 Query 1756 TTTGTGTTGCTTTGCCAGTCCCGCTGGGCCCCCATGAATTCCTTAAAGTGCT------TT 1809 ||||| ||| | ||| | |||| || || | ||| | | | | |||| || Sbjct 4329 TTTGTATTGGCCTACCA-TTGTGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATT 4387 Query 1810 AGATAGTGCGGGTCGACGTCATCAATGACGTTATACCATGC 1850 | ||| | | |||||| | ||||||||||||||||| Sbjct 4388 AAATAATTTGAAGGGACGTCGTTGATGACGTTATACCATGC 4428 >seq35612 Length=1588 Score = 80.6 bits (88), Expect = 5e-12 Identities = 64/77 (83%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1696 CCAGGATTGCACAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATCGGCTTTCCGTAC 1755 ||||||||||| || | |||| | ||||| |||||||||||||||| || ||||||||| Sbjct 1510 CCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCGTAC 1569 Query 1756 TTTGTGTTGCTTTGCCA 1772 |||| |||| ||||| Sbjct 1570 TTTGCGTTGGCCTGCCA 1586 >seq20728 Length=3653 Score = 80.6 bits (88), Expect = 5e-12 Identities = 104/143 (73%), Gaps = 7/143 (5%) Strand=Plus/Plus Query 1720 GGAATTCCGCCTTTAATTTGAATCGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCGC 1779 ||||| || ||||||||||||| || ||||||||||||| ||| |||| || ||| Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1780 TGGGCCCCCATGAATTCCTTAAAGTGCT------TTAGATAGTGCGGGTCGACGTCATCA 1833 || || || | ||| | | | | |||| ||| ||| | ||| ||||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1834 ATGACGTTATACCATGCTTCGTT 1856 ||||||||||| ||||| || || Sbjct 1561 ATGACGTTATATCATGCATCATT 1583 >seq442 Length=237535 Score = 80.6 bits (88), Expect = 5e-12 Identities = 163/240 (68%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 1623 ATTCTTTAATGCCCAAGCTTTCAAAGCTGCATTCTTTTCTTCGTCCAAGAAATCTTTATA 1682 ||| | ||| | ||||| |||| || || ||| ||| |||||||| |||||| Sbjct 22708 ATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGAATCTAAATCCAAGAATGTTTTATA 22767 Query 1683 CGAGGACGTCGACCCAGGATTGCACAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAAT 1742 || | | | ||||||||||| || |||| | ||||| ||||||||||||||| Sbjct 22768 GGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAATTTGAAC 22827 Query 1743 CGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCCCGCTGGGCCCCCATGAATTCCTTAAA 1802 | ||||||||||||| ||| ||| ||| || || || || | ||| | | | | Sbjct 22828 TGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTGTTAATA 22887 Query 1803 GTGCT------TTAGATAGTGCGGGTCGACGTCATCAATGACGTTATACCATGCTTCGTT 1856 |||| ||| ||| | || |||||| || || |||||||||| ||| || || Sbjct 22888 ATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACGTTATACC-TGCATCATT 22945 >seq30129 Length=3650 Score = 78.8 bits (86), Expect = 2e-11 Identities = 76/98 (78%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 1696 CCAGGATTGCACAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATCGGCTTTCCGTAC 1755 ||||||||||| || | |||| | ||||| |||||||||||||||| | ||||||||| Sbjct 2374 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTCGTTTTCCGTAC 2433 Query 1756 TTTGTGTTGCTTTGCCAGTCCCGCTGGGCCCCCATGAA 1793 |||| ||| ||||| | ||||| || || | ||| Sbjct 2434 TTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAA 2471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8657358174920