Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_030699.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq3283 127 4e-26 seq3439 116 6e-23 seq22495 96.9 6e-17 seq77518 91.5 3e-15 seq953 91.5 3e-15 seq35612 89.7 9e-15 seq3059 86.0 1e-13 seq4104 84.2 4e-13 seq442 84.2 4e-13 seq54129 82.4 1e-12 seq33 82.4 1e-12 seq30129 80.6 5e-12 seq5745 80.6 5e-12 seq20728 77.0 6e-11 >seq3283 Length=49157 Score = 127 bits (140), Expect = 4e-26 Identities = 231/334 (69%), Gaps = 12/334 (4%) Strand=Plus/Minus Query 1606 GAATTCTGCATTTTTCAGAGCCCACTCTTTTAAAGCTGAGTGCTTGTCCTCGTCCAAGTA 1665 |||||||||||||| |||| ||| ||| || ||| | ||| |||||| | Sbjct 2362 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 2303 Query 1666 CTCTTTATATGAT-GATGTTGGCCCTGGATTGCATAGGAAGATAGTGGGAATACCTCCTT 1724 | |||||| ||| ||| || || |||||||| || | |||| | ||||| || |||| Sbjct 2302 CGTTTTATAGGATTGATCA-GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTT 2244 Query 1725 TAATTTGAATTGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATGA 1784 ||||||||| |||||||||||| |||| ||| |||||| | || || || || | || Sbjct 2243 TAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGA 2184 Query 1785 ATTCTTTAAAGTGCT------TTAGATAATGCGGGTCTACGTCATCAACCACGTTATACC 1838 | | || | | |||| ||| ||||| ||| ||||| || | |||||||||| Sbjct 2183 ACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACC 2124 Query 1839 ACGCATCATTGCTGTATACCTTT--GGACTCAAATCTAGGTGTCCACATAGGTAATTATG 1896 | |||||||| || ||| ||| | | | ||||| | ||| || ||| || || Sbjct 2123 ATGCATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTG 2066 Query 1897 GGGCCCTAATGACCTGGCCCACATGGTCTTCCCT 1930 || |||||||| | ||||| || |||||| Sbjct 2065 TGGGCCTAATGAACGAGCCCATGCTGTTTTCCCT 2032 >seq3439 Length=62978 Score = 116 bits (128), Expect = 6e-23 Identities = 226/332 (68%), Gaps = 10/332 (3%) Strand=Plus/Minus Query 1607 AATTCTGCATTTTTCAGAGCCCACTCTTTTAAAGCTGAGTGCTTGTCCTCGTCCAAGTAC 1666 ||||||||||||| |||| ||| ||| || ||| | ||| || ||| || Sbjct 1041 AATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCTAAGAAC 982 Query 1667 TCTTTATATGATGATGTTGGCCCTGGATTGCATAGGAAGATAGTGGGAATACCTCCTTTA 1726 |||||| ||| || || || ||||||| || | |||| | ||||| || |||||| Sbjct 981 GTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTA 922 Query 1727 ATTTGAATTGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATGAAT 1786 ||||||| |||||| ||||| |||| |||| ||||| | || || || || | ||| Sbjct 921 ATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAAC 862 Query 1787 TCTTTAAAGTGCT------TTAGATAATGCGGGTCTACGTCATCAACCACGTTATACCAC 1840 | || | | |||| ||| ||||| ||| || ||||| | ||||||||||| Sbjct 861 TGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCAT 802 Query 1841 GCATCATTGCTGTATACCTTT--GGACTCAAATCTAGGTGTCCACATAGGTAATTATGGG 1898 |||||||| || ||| ||| | | | ||||| | ||| || ||| || || | Sbjct 801 GCATCATT--TGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTG 744 Query 1899 GCCCTAATGACCTGGCCCACATGGTCTTCCCT 1930 | |||||||| | ||||| || |||||| Sbjct 743 GGCCTAATGAACGAGCCCATGCTGTTTTCCCT 712 >seq22495 Length=567 Score = 96.9 bits (106), Expect = 6e-17 Identities = 171/248 (69%), Gaps = 10/248 (4%) Strand=Plus/Minus Query 1669 TTTATATGATGATGTTGGCCCTGGATTGCATAGGAAGATAGTGGGAATACCTCCTTTAAT 1728 |||||| ||| | || || |||||||| || | |||| | |||| || | |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1729 TTGAATTGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATGAATTC 1788 ||||| |||||| ||||| |||| ||| |||||||| | || || || | ||| | Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1789 TTTAAAGTGCT------TTAGATAATGCGGGTCTACGTCATCAACCACGTTATACCACGC 1842 || | | |||| ||| ||||| ||| | |||||| | ||||||||||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1843 ATCATTGCTGTATACCTTT--GGACTCAAATCTAGGTGTCCACATAGGTAATTATGGGGC 1900 |||||| || ||| ||| | | | ||||| | ||| || ||| || || || Sbjct 206 ATCATT--TGAGTACGTTTTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGG 149 Query 1901 CCTAATGA 1908 |||||||| Sbjct 148 CCTAATGA 141 >seq77518 Length=14724 Score = 91.5 bits (100), Expect = 3e-15 Identities = 174/254 (69%), Gaps = 13/254 (5%) Strand=Plus/Minus Query 1606 GAATTCTGCATTTTTCAGAGCCCACTCTTTTAAAGCTGAGTGCTTG--TCCTCGTCCAAG 1663 |||||||||||||| | || |||| |||| || ||| | ||| || |||||| Sbjct 2485 GAATTCTGCATTTTGTAAAGTCCACGATTTTCAATTTGAAT--TTGAATCTAAATCCAAG 2428 Query 1664 TACTCTTTATATGATGATGTTGG---CCCTGGATTGCATAGGAAGATAGTGGGAATACCT 1720 | ||||||| ||| | ||| ||| |||||||| || | |||| ||||| || Sbjct 2427 AATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCG 2368 Query 1721 CCTTTAATTTGAATTGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCTCTTTGGGCCCCC 1780 ||||||||||||| || ||| |||| |||| || ||| |||| | ||| || || Sbjct 2367 CCTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCT 2308 Query 1781 ATGAATTCTTTAAAGTGCT------TTAGATAATGCGGGTCTACGTCATCAACCACGTTA 1834 | ||| | || | | |||| ||| |||| || || ||||||| |||||| Sbjct 2307 ACGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATGACGTTA 2248 Query 1835 TACCACGCATCATT 1848 |||||||| || || Sbjct 2247 TACCACGCGTCGTT 2234 >seq953 Length=224861 Score = 91.5 bits (100), Expect = 3e-15 Identities = 183/270 (68%), Gaps = 10/270 (4%) Strand=Plus/Plus Query 1669 TTTATATGATGATGTTGGCCCTGGATTGCATAGGAAGATAGTGGGAATACCTCCTTTAAT 1728 |||||| ||| | || || |||||||| | | |||| | ||||| || |||||||| Sbjct 1824 TTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTTTAAT 1883 Query 1729 TTGAATTGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATGAATTC 1788 |||||||| ||| ||||| |||| ||| |||||| | || || | || | ||| | Sbjct 1884 TTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGAACTG 1943 Query 1789 TTTAAAGTGCT------TTAGATAATGCGGGTCTACGTCATCAACCACGTTATACCACGC 1842 || | | | || ||| ||||| ||| ||||| || | ||||||||||| || Sbjct 1944 TTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACCATGC 2003 Query 1843 ATCATTGCTGTATACCTTT--GGACTCAAATCTAGGTGTCCACATAGGTAATTATGGGGC 1900 |||||| || ||| ||| | | | ||||| | || || ||| || || || Sbjct 2004 ATCATT--TGAGTACGTTTTCGAATTAAAATCCATAAATCTCATTATGTAGTTGTGTGGG 2061 Query 1901 CCTAATGACCTGGCCCACATGGTCTTCCCT 1930 |||||||| | ||||| || |||||| Sbjct 2062 CCTAATGAACGAGCCCATGCTGTTTTCCCT 2091 >seq35612 Length=1588 Score = 89.7 bits (98), Expect = 9e-15 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 1606 GAATTCTGCATTTTTCAGAGCCCACTCTTTTAAAGCTGAGTGCTTGTCCTCGTCCAAGTA 1665 |||||||||||||| |||| ||| ||| || ||| | ||| |||||| | Sbjct 1428 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 1487 Query 1666 CTCTTTATATGATGATGTTGGCCCTGGATTGCATAGGAAGATAGTGGGAATACCTCCTTT 1725 |||||| ||| | || || |||||||| || | |||| | ||||| || ||||| Sbjct 1488 TGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTT 1547 Query 1726 AATTTGAATTGGTTTCCCGTATTTTGTGTTGCTCTGCCA 1764 |||||||| |||||| ||||| |||| |||| |||||| Sbjct 1548 AATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq3059 Length=182465 Score = 86.0 bits (94), Expect = 1e-13 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 1606 GAATTCTGCATTTTTCAGAGCCCACTCTTTTAAAGCTGAGTGCTTGTCCTCGTCCAAGTA 1665 ||||||| |||||| |||| ||| ||| || ||| | ||| |||||| | Sbjct 20498 GAATTCTACATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 20439 Query 1666 CTCTTTATATGATGATGTTGGCCCTGGATTGCATAGGAAGATAGTGGGAATACCTCCTTT 1725 | ||||| ||| | || || |||||||| || | |||| | ||||| || ||||| Sbjct 20438 CGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTT 20379 Query 1726 AATTTGAATTGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATGAA 1785 ||||||||||||||| ||||| |||| ||| || ||||| | || || || | ||| Sbjct 20378 AATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGCGCCTACGAA 20319 Query 1786 TTCTTTAAAGTGCTT 1800 | || | | ||||| Sbjct 20318 CTGTTGATAATGCTT 20304 >seq4104 Length=64936 Score = 84.2 bits (92), Expect = 4e-13 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 1606 GAATTCTGCATTTTTCAGAGCCCACTCTTTTAAAGCTGAGTGCTTGTCCTCGTCCAAGTA 1665 |||||||||||||| |||| ||| ||| || ||| | ||| |||||| | Sbjct 20909 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAA 20850 Query 1666 CTCTTTATATGATGATGTTGGCCCTGGATTGCATAGGAAGATAGTGGGAATACCTCCTTT 1725 | |||||| ||| | || || |||||||| || | |||| | ||||| || ||||| Sbjct 20849 CGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTT 20790 Query 1726 AATTTGAATTGGTTTCCCGTATTTTG 1751 |||||||| |||||| ||||| |||| Sbjct 20789 AATTTGAACTGGTTTTCCGTACTTTG 20764 >seq442 Length=237535 Score = 84.2 bits (92), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 1658 TCCAAGTACTCTTTATATGATGATGTTGGCCCTGGATTGCATAGGAAGATAGTGGGAATA 1717 |||||| | |||||| ||| | | || || |||||||| || |||| | ||||| Sbjct 22751 TCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATC 22810 Query 1718 CCTCCTTTAATTTGAATTGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCTCTTTGGGCC 1777 | ||||||||||||| || ||| ||||| |||| ||| |||| ||| || ||| || Sbjct 22811 TCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCG 22870 Query 1778 CCCATGAATTCTTTAAAGTGCT------TTAGATAATGCGGGTCTACGTCATCAACCACG 1831 || | ||| | || | | |||| ||| ||||| || ||||| || | ||| Sbjct 22871 CCTACGAACTGTTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACG 22929 Query 1832 TTATACCACGCATCATT 1848 ||||||| |||||||| Sbjct 22930 TTATACC-TGCATCATT 22945 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/170 (71%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1685 GGCCCTGGATTGCATAGGAAGATAGTGGGAATACCTCCTTTAATTTGAATTGGTTTCCCG 1744 || || |||||||| || | |||| | ||||| || |||||||||||||||||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1745 TATTTTGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGCT----- 1799 || |||| ||| ||| |||| || || || | ||| | || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1800 -TTAGATAATGCGGGTCTACGTCATCAACCACGTTATACCACGCATCATT 1848 ||| ||||| ||| || || || | ||||||||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq33 Length=454124 Score = 82.4 bits (90), Expect = 1e-12 Identities = 213/322 (66%), Gaps = 12/322 (4%) Strand=Plus/Minus Query 1606 GAATTCTGCATTTTTCAGAGCCCACTCTTTTAAAGCTGAGTGCTTG--TCCTCGTCCAAG 1663 |||||||||||| | | || |||| ||| || ||| | ||| || || ||| Sbjct 403386 GAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTTGAAT--TTGAATCTATATCGAAG 403329 Query 1664 TACTCTTTATATGATGATGTTGG--CCCTGGATTGCATAGGAAGATAGTGGGAATACCTC 1721 || ||||||| || | ||| ||| |||||||| || | |||| ||||| || | Sbjct 403328 AACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCGC 403269 Query 1722 CTTTAATTTGAATTGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCA 1781 ||||||||||| |||||| ||||| |||| || |||||||| | || | || | Sbjct 403268 TTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCTA 403209 Query 1782 TGAATTCTTTAAAGTGCT------TTAGATAATGCGGGTCTACGTCATCAACCACGTTAT 1835 ||| | || | | || | ||| |||| || |||||||||| ||||||| Sbjct 403208 CGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGACGTTAT 403149 Query 1836 ACCACGCATCATTGCTGTATACCTTTGGACTCAAATCTAGGTGTCCACATAGGTAATTAT 1895 ||||||| || || |||| | | | ||||||| | || || |||||||| Sbjct 403148 ACCACGCGTCGTTCGAGTATGTTCTCGAATTCAAATCCATAAAGCCCATTATGTAATTAT 403089 Query 1896 GGGGCCCTAATGACCTGGCCCA 1917 | || || || || | ||||| Sbjct 403088 GTGGACCCAACGAACGTGCCCA 403067 >seq30129 Length=3650 Score = 80.6 bits (88), Expect = 5e-12 Identities = 134/194 (69%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 1607 AATTCTGCATTTTTCAGAGCCCACTCTTTTAAAGCTGAGTGCTTGTCCTCGTCCAAGTAC 1666 ||||||||||||| |||| | | ||| || ||| | ||| |||||| || Sbjct 2293 AATTCTGCATTTTGTAGAGTCTAAGTTTTCCAATATGAATTGGACTCCAAATCCAAGAAC 2352 Query 1667 TCTTTATATGATGATGTTGGCCCTGGATTGCATAGGAAGATAGTGGGAATACCTCCTTTA 1726 ||| || ||| | || || |||||||| || | |||| | ||||| || |||||| Sbjct 2353 GTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTA 2412 Query 1727 ATTTGAATTGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCTCTTTGGGCCCCCATGAAT 1786 ||||||| | |||| ||||| |||| ||| |||||| | || || || || | ||| Sbjct 2413 ATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAAC 2472 Query 1787 TCTTTAAAGTGCTT 1800 | || | | ||||| Sbjct 2473 TGTTGATAATGCTT 2486 >seq5745 Length=45059 Score = 80.6 bits (88), Expect = 5e-12 Identities = 138/200 (69%), Gaps = 9/200 (5%) Strand=Plus/Plus Query 1658 TCCAAGTACTCTTTATATGATGATGTTGG---CCCTGGATTGCATAGGAAGATAGTGGGA 1714 || ||| || ||||||| ||| | ||| ||| |||||||| | | |||| ||| Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1715 ATACCTCCTTTAATTTGAATTGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCTCTTTGG 1774 || || ||||||||||||| |||||| ||||| |||| || |||||| | | ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1775 GCCCCCATGAATTCTTTAAAGTGCT------TTAGATAATGCGGGTCTACGTCATCAACC 1828 || || ||||| | || | | || | ||| |||| || | |||||||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATG 43687 Query 1829 ACGTTATACCACGCATCATT 1848 ||||||||||| || || || Sbjct 43688 ACGTTATACCATGCGTCGTT 43707 >seq20728 Length=3653 Score = 77.0 bits (84), Expect = 6e-11 Identities = 155/227 (68%), Gaps = 11/227 (5%) Strand=Plus/Plus Query 1712 GGAATACCTCCTTTAATTTGAATTGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCTCTT 1771 ||||| || ||||||||||||| |||||| ||||| |||| ||| ||||| || | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGCGC 1500 Query 1772 TGGGCCCCCATGAATTCTTTAAAGTGCT------TTAGATAATGCGGGTCTACGTCATCA 1825 || || || | ||| | || | | |||| ||| ||||| ||| |||||||| Sbjct 1501 TGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATCG 1560 Query 1826 ACCACGTTATACCACGCATCATTGCTGTATACCTTT--GGACTCAAATCTAGGTGTCCAC 1883 | |||||||| || |||||||| || ||| ||| | | | ||||||| || Sbjct 1561 ATGACGTTATATCATGCATCATT--TGAGTACGTTTTCGAATTAAAATCTATAAATCTCA 1618 Query 1884 ATAGGTAATTATGGGGCCCTAATGACCTGGCCCACATGGTCTTCCCT 1930 || ||| || || || ||||||| | ||||| || |||||| Sbjct 1619 TTATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCCT 1665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8711706435250