Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_030700.1 Length=2837 Score E Sequences producing significant alignments: (Bits) Value seq3283 134 2e-28 seq3439 125 1e-25 seq20728 95.1 2e-16 seq5745 89.7 9e-15 seq80468 87.8 3e-14 seq77518 80.6 5e-12 seq22495 78.8 2e-11 >seq3283 Length=49157 Score = 134 bits (148), Expect = 2e-28 Identities = 206/288 (72%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 1758 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1817 ||| |||||||| || | |||| | ||||| || ||||||||||||||||| |||||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1818 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCTT----- 1871 ||| || |||| ||||| | ||| || || | ||| | || | | ||||| Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1872 -TAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACACTT 1930 || || | || |||||| || |||||||||||||| ||| || |||| || Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTT 2103 Query 1931 TAGGGCTTAGATC--TAAATGCCCACACAAATAATTGTGAGGGCCTAAAGACCTGGCCCA 1988 | | | | ||| ||||| |||| | || ||||| |||||||| || | ||||| Sbjct 2102 TGGAATTAAAATCCATAAAT-CCCATT-ATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 Query 1989 TACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGG 2036 | ||||||| |||||||| |||||||||||||| |||| ||||| Sbjct 2044 TGCTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 1997 >seq3439 Length=62978 Score = 125 bits (138), Expect = 1e-25 Identities = 199/282 (71%), Gaps = 10/282 (4%) Strand=Plus/Minus Query 1763 GATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTAC 1822 ||||||| || | |||| | ||||| || ||||||||||||||||| || ||||| || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1823 AGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCTT------TAGGT 1876 ||||| ||||| | ||| || || | ||| | || | | ||||| || | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1877 ATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACACTTTAGGGC 1936 | | || ||| ||||| |||||||||||||| ||| || |||| ||| | Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1937 TTAGATC--TAAATGCCCACACAAATAATTGTGAGGGCCTAAAGACCTGGCCCATACTGT 1994 | | ||| ||||| |||| | || ||||| |||||||| || | |||||| |||| Sbjct 776 TAAAATCCATAAAT-CCCATT-ATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGT 719 Query 1995 TTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGG 2036 ||| |||||||| |||||||||||||| |||| ||||| Sbjct 718 TTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGG 677 >seq20728 Length=3653 Score = 95.1 bits (104), Expect = 2e-16 Identities = 177/254 (70%), Gaps = 11/254 (4%) Strand=Plus/Plus Query 1783 GGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA-TTTACAGTTGGATTGCCAGTCCTT 1841 ||||| || ||||||||||||| ||| || ||||| ||| || |||| |||| | | Sbjct 1442 GGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCA-TTGGCCTGCCGTTGCG- 1499 Query 1842 CTGGGCCCCCATGAATTCTTTAAAGTGCTTT------AGGTATTGGGGGTTGACGTCATC 1895 ||| || || | ||| | || | | |||||| | || | || ||||||||| Sbjct 1500 CTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCATC 1559 Query 1896 AATGACGTTATACCAAGCACTGTTGCTGTACACTTTAGGGCTTAGATCTA-AATGCCCAC 1954 ||||||||||| || ||| || |||| ||| | | | ||||| || | || Sbjct 1560 GATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTATAAATCTCAT 1619 Query 1955 ACAAATAATTGTGAGGGCCTAAAGACCTGGCCCATACTGTTTTGCCTATTCTGCTTGGGC 2014 | || ||||| ||| |||| || | |||||| ||||||| |||||||| ||||| Sbjct 1620 T-ATGTAGTTGTGTGGGACTAATGAACGAGCCCATGCTGTTTTCCCTATTCTTGATGGGC 1678 Query 2015 CTTCAATAACAATG 2028 ||||||||| |||| Sbjct 1679 CTTCAATAATAATG 1692 >seq5745 Length=45059 Score = 89.7 bits (98), Expect = 9e-15 Identities = 192/280 (69%), Gaps = 14/280 (5%) Strand=Plus/Plus Query 1759 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA- 1817 || |||||||| | | |||| ||||| |||||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1818 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCTT--TAAAGTGCTTTAGG 1875 ||| || || || ||||| | || || || ||||| | || ||| || |||| Sbjct 43601 TTTGCA-TTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAAT 43659 Query 1876 TA------TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACACT 1929 || ||| || || ||||||||||||||||||||| || ||| || | Sbjct 43660 TAAATAAGCTGGAGG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTT 43717 Query 1930 TTAGGGCTTAGATCTA-AATGCCCACACAAATAATTGTGAGGGCCTAAAGACCTGGCCCA 1988 || | | | ||| | || ||||| | |||||| || || || || || | ||||| Sbjct 43718 TTCGAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACGAACGTGCCCA 43776 Query 1989 TACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATG 2028 |||||||| || ||||| || | | |||||| |||| Sbjct 43777 AACTGTTTTACCGATTCTAGAAGGTCTTGCAATAATAATG 43816 >seq80468 Length=4946 Score = 87.8 bits (96), Expect = 3e-14 Identities = 192/277 (69%), Gaps = 18/277 (6%) Strand=Plus/Plus Query 1763 GATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTAC 1822 ||||||| || | |||| | |||||||| |||||||| ||||| || || ||||| || Sbjct 4273 GATTGCAAAGTACGATACTTGGAATTCCGCCTTTAATCTGAACAGGTTTTCCGTACTTTG 4332 Query 1823 AGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCTT------TAGGT 1876 |||| | ||| | | ||| || || | ||| | || | | ||||| || | Sbjct 4333 TATTGGCCTACCATTG-TGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 4391 Query 1877 A--TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACACTTTAGG 1934 | ||| || |||||| | |||||||||||||| ||| ||| |||| ||| || Sbjct 4392 AATTTGAAGG--GACGTCGTTGATGACGTTATACCATGCATAATTGA-GTACGTTTT-GG 4447 Query 1935 GCTTAGA--TC-TAAATGCCCACACAAATAATTGTGAGGGCCTAAAGACCTGGCCCATAC 1991 ||| | || ||||| |||| | || ||||| | |||||| | | | |||| | Sbjct 4448 AATTAAAATTCATAAAT-CCCATT-ATGTAGTTGTGTGAGCCTAATCAACGAGTCCATGC 4505 Query 1992 TGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATG 2028 |||||| | |||||| |||||||||||||| |||| Sbjct 4506 TGTTTTCCATATTCTTGATGGGCCTTCAATAATAATG 4542 >seq77518 Length=14724 Score = 80.6 bits (88), Expect = 5e-12 Identities = 195/288 (68%), Gaps = 17/288 (6%) Strand=Plus/Minus Query 1759 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA- 1817 || |||||||| || | |||| ||||| || |||||||||||||||| || |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1818 TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGC--TTTAGG 1875 ||| || || || || |||| || || || | ||| | || | | ||| |||| Sbjct 2340 TTTGCA-TTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1876 TA------TTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTGTACACT 1929 || ||| || ||| |||||||||||||||||||| || ||| ||| | Sbjct 2281 TAAATAAGCTGGAGG--GACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTT 2224 Query 1930 TTAGGGCTTAGATCTA-AATGCCCACACAAATAATTGTGAGGGCCTAAAGACCTGGCCCA 1988 || | | ||| | || ||||| | |||||| || || || || | | ||||| Sbjct 2223 TTCAAATTCAAATCCATAAAGCCCA-TTATATAATTATGTGGACCCAACTAACGTGCCCA 2165 Query 1989 TACTGTTTTGCCTATTCTGCTTGGGCCTTCAATAACAATGGATATGGG 2036 |||||||| || ||| || || |||||||||| |||| | |||| Sbjct 2164 AACTGTTTTACCGATT---CTAGGTCCTTCAATAATAATGTTTTTGGG 2120 >seq22495 Length=567 Score = 78.8 bits (86), Expect = 2e-11 Identities = 117/164 (71%), Gaps = 8/164 (5%) Strand=Plus/Minus Query 1758 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTCCCGTA 1817 ||| |||||||| || | |||| | |||| || | ||||||||||||||| || ||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1818 -TTTACAGTTGGATTGCCAGTCCTTCTGGGCCCCCATGAATTCTTTAAAGTGCT------ 1870 ||| || |||| ||||||| ||| || || | ||| | || | | |||| Sbjct 308 CTTTGCA-TTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA 250 Query 1871 TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCA 1914 ||| || | || || |||||| |||||||||||||| ||| Sbjct 249 TTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCA 206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8957621263950