Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_030748.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq3439 105 1e-19 seq22495 100 5e-18 seq33 100 5e-18 seq5745 98.7 2e-17 seq77518 96.9 6e-17 seq3283 96.9 6e-17 seq1993 89.7 9e-15 seq4104 86.0 1e-13 seq490 86.0 1e-13 seq54129 82.4 1e-12 seq442 80.6 5e-12 seq35612 78.8 2e-11 seq6801 78.8 2e-11 seq20728 77.0 6e-11 >seq3439 Length=62978 Score = 105 bits (116), Expect = 1e-19 Identities = 137/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 1648 TCTAAGTACTCTTTATAGCTCGAATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGTATC 1707 |||||| || ||||||| | | || || ||||||| || | ||| |||| ||| Sbjct 990 TCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATC 931 Query 1708 CCGCCTTTAATTTGAACTGGCTTTCCGTACTTCGTGTTTGATTGCCAGTCCCTTTGGGCC 1767 |||||||||||||||||||| ||||||||||| | ||| | ||||| | | || || Sbjct 930 CCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCG 871 Query 1768 CCCATGAATTCCTTAAAGTGCT------TTAGATAGTGCGGATCGACGTCATCAATGACG 1821 || | ||| | | | | |||| ||| ||| | |||| ||| ||||| |||||| Sbjct 870 CCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACG 811 Query 1822 TTATACCATG 1831 |||||||||| Sbjct 810 TTATACCATG 801 >seq22495 Length=567 Score = 100 bits (110), Expect = 5e-18 Identities = 136/190 (72%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 1648 TCTAAGTACTCTTTATAGCTCGAATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGTATC 1707 |||||| | ||||||| ||| || || |||||||| || | ||| || | ||| Sbjct 397 TCTAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATC 338 Query 1708 CCGCCTTTAATTTGAACTGGCTTTCCGTACTTCGTGTTTGATTGCCAGTCCCTTTGGGCC 1767 |||| ||||||||||||||| ||||||||||| | || | ||||||| | || || Sbjct 337 CCGCATTTAATTTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCG 278 Query 1768 CCCATGAATTCCTTAAAGTGCT------TTAGATAGTGCGGATCGACGTCATCAATGACG 1821 || | ||| | | | | |||| ||| ||| | |||| || |||||| |||||| Sbjct 277 CCTACGAACTGTTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACG 218 Query 1822 TTATACCATG 1831 |||||||||| Sbjct 217 TTATACCATG 208 >seq33 Length=454124 Score = 100 bits (110), Expect = 5e-18 Identities = 164/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 1677 CCCTGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTA 1736 ||| |||||||| || | ||| ||| ||||||| ||||||||||||||| |||||||| Sbjct 403303 CCCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTA 403244 Query 1737 CTTCGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------T 1790 ||| | ||||| ||||||| | || | || | ||| | | | | || | | Sbjct 403243 CTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAAT 403184 Query 1791 TAGATAGTGCGGATCGACGTCATCAATGACGTTATACCATGACTCGTTGCTGTACACTTT 1850 || ||| ||| |||||||||||||||||||||||| | ||||| ||| | | Sbjct 403183 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCT 403124 Query 1851 AGGACTCAGATCTAGGTGTCCACAAAGGTAATTATGCGGACCCAATGACCTGGCCCA 1907 | | ||| ||| | || | ||||||||| |||||||| || | ||||| Sbjct 403123 CGAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq5745 Length=45059 Score = 98.7 bits (108), Expect = 2e-17 Identities = 142/200 (71%), Gaps = 9/200 (5%) Strand=Plus/Plus Query 1648 TCTAAGTACTCTTTATAGCTCGAATTGGG---CCCTGGATTGCAGAGGAAGATTGTTGGT 1704 |||||| || ||||||| ||| || ||| |||||||| | | ||| ||| Sbjct 43508 TCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGGA 43567 Query 1705 ATCCCGCCTTTAATTTGAACTGGCTTTCCGTACTTCGTGTTTGATTGCCAGTCCCTTTGG 1764 ||||| ||||||||||||||||| || |||||||| | ||||| ||||| | | ||| Sbjct 43568 ATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTGT 43627 Query 1765 GCCCCCATGAATTCCTTAAAGTGCT------TTAGATAGTGCGGATCGACGTCATCAATG 1818 || || ||||| | | | | || | ||| ||| ||| || |||||||||| Sbjct 43628 GCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAATG 43687 Query 1819 ACGTTATACCATGACTCGTT 1838 ||||||||||||| ||||| Sbjct 43688 ACGTTATACCATGCGTCGTT 43707 >seq77518 Length=14724 Score = 96.9 bits (106), Expect = 6e-17 Identities = 122/168 (73%), Gaps = 6/168 (4%) Strand=Plus/Minus Query 1677 CCCTGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTA 1736 ||| |||||||| || | ||| ||| |||||||||||||||||||||| ||| |||| Sbjct 2401 CCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTA 2342 Query 1737 CTTCGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------T 1790 ||| | ||||| || |||| | ||| || || | ||| | | | | |||| | Sbjct 2341 CTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAAT 2282 Query 1791 TAGATAGTGCGGATCGACGTCATCAATGACGTTATACCATGACTCGTT 1838 || ||| ||| ||| |||||||||||||||||||| | ||||| Sbjct 2281 TAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq3283 Length=49157 Score = 96.9 bits (106), Expect = 6e-17 Identities = 119/163 (73%), Gaps = 6/163 (4%) Strand=Plus/Minus Query 1675 GGCCCTGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTTCCG 1734 || || |||||||| || | ||| |||| ||||||||||||||||||||||| || ||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1735 TACTTCGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1789 ||||| | || | ||||| | | || || || | ||| | | | | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1790 -TTAGATAGTGCGGATCGACGTCATCAATGACGTTATACCATG 1831 ||| ||| | |||| |||||| || |||||||||||||||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATG 2121 >seq1993 Length=81530 Score = 89.7 bits (98), Expect = 9e-15 Identities = 115/159 (72%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 1677 CCCTGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTA 1736 ||| |||||||| || | ||| ||| |||||| |||||||||||||||| || ||||| Sbjct 74404 CCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTA 74345 Query 1737 CTTCGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT------T 1790 ||| | ||||| ||||| | | ||| || | | ||| | | | | || | | Sbjct 74344 CTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAAT 74285 Query 1791 TAGATAGTGCGGATCGACGTCATCAATGACGTTATACCA 1829 || ||| ||| |||||||||||||||||||||||| Sbjct 74284 TAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCA 74246 >seq4104 Length=64936 Score = 86.0 bits (94), Expect = 1e-13 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 1648 TCTAAGTACTCTTTATAGCTCGAATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGTATC 1707 || ||| || ||||||| ||| ||| || |||||||| || | ||| |||| ||| Sbjct 20857 TCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAATC 20798 Query 1708 CCGCCTTTAATTTGAACTGGCTTTCCGTACTT 1739 |||||||||||||||||||| ||||||||||| Sbjct 20797 CCGCCTTTAATTTGAACTGGTTTTCCGTACTT 20766 >seq490 Length=137872 Score = 86.0 bits (94), Expect = 1e-13 Identities = 121/166 (73%), Gaps = 12/166 (7%) Strand=Plus/Minus Query 1683 ATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTACTTCGT 1742 |||||| |||| |||| |||||| || ||||||||||| | |||||| | || || | Sbjct 70618 ATTGCATAGGACAATTGATGGTATTCCACCTTTAATTTGTATTGGCTTAGCATATTTTGA 70559 Query 1743 GTTTGATTGCCAGTCCCTTTG---GGCCCCCATGAATTCCTTAAAGTGCTTT----AGAT 1795 | | ||||||| || || |||||| || | ||| | | ||||| ||| Sbjct 70558 ATCAGCTTGCCAG---CTATGCTTGGCCCCAATAAGCTCCCTCCAATGCTTCTTCCAGAG 70502 Query 1796 AG-TGC-GGATCGACGTCATCAATGACGTTATACCATGACTCGTTG 1839 || ||| ||| ||||||||| |||||||||||||||||||| ||| Sbjct 70501 AGATGCTGGAGGGACGTCATCTATGACGTTATACCATGACTCATTG 70456 >seq54129 Length=2260 Score = 82.4 bits (90), Expect = 1e-12 Identities = 115/162 (71%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 1675 GGCCCTGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAATTTGAACTGGCTTTCCG 1734 || || |||||||| || | ||| |||| ||||||||||||||||||| ||| |||||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1735 TACTTCGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCT----- 1789 ||||| | || | || |||| || || || | ||| | | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1790 -TTAGATAGTGCGGATCGACGTCATCAATGACGTTATACCAT 1830 ||| ||| | |||| ||| || || ||||||||||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCAT 2099 >seq442 Length=237535 Score = 80.6 bits (88), Expect = 5e-12 Identities = 124/176 (70%), Gaps = 7/176 (4%) Strand=Plus/Plus Query 1659 TTTATAGCTCGAATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAAT 1718 ||||||| |||| || || |||||||| || ||| |||| ||| |||||||||| Sbjct 22762 TTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAATCTCGCCTTTAAT 22821 Query 1719 TTGAACTGGCTTTCCGTACTTCGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTC 1778 |||||||| ||||||||||| | || | ||| ||| | ||| || || | ||| | Sbjct 22822 TTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGCGCCTACGAACTG 22881 Query 1779 CTTAAAGTGCT------TTAGATAGTGCGGATCGACGTCATCAATGACGTTATACC 1828 | | | |||| ||| ||| | || | |||||| || || |||||||||| Sbjct 22882 TTAATAATGCTTTTTAATTAAATAATTCGAAGGGACGTC-TCGATAACGTTATACC 22936 >seq35612 Length=1588 Score = 78.8 bits (86), Expect = 2e-11 Identities = 75/96 (78%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 1659 TTTATAGCTCGAATTGGGCCCTGGATTGCAGAGGAAGATTGTTGGTATCCCGCCTTTAAT 1718 ||||||| ||| || || |||||||| || | ||| |||| || ||||||||||| Sbjct 1491 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAAT 1550 Query 1719 TTGAACTGGCTTTCCGTACTTCGTGTTTGATTGCCA 1754 ||||||||| ||||||||||| | ||| | ||||| Sbjct 1551 TTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq6801 Length=49729 Score = 78.8 bits (86), Expect = 2e-11 Identities = 86/112 (77%), Gaps = 3/112 (3%) Strand=Plus/Plus Query 1648 TCTAAGTACTCTTTATAGCTCGAATTGGG--CCCT-GGATTGCAGAGGAAGATTGTTGGT 1704 || ||| || |||||||| | ||| || |||| ||| |||| || | ||| ||| Sbjct 47061 TCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGGA 47120 Query 1705 ATCCCGCCTTTAATTTGAACTGGCTTTCCGTACTTCGTGTTTGATTGCCAGT 1756 ||||||||||||||||||||||| || |||||||| | ||||| ||| ||| Sbjct 47121 ATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGT 47172 >seq20728 Length=3653 Score = 77.0 bits (84), Expect = 6e-11 Identities = 120/171 (70%), Gaps = 7/171 (4%) Strand=Plus/Plus Query 1700 TTGGTATCCCGCCTTTAATTTGAACTGGCTTTCCGTACTTCGTGTTTGATTGCCAGTCCC 1759 |||| ||||| ||||||||||||| ||| ||||||||||| | || | |||| || | Sbjct 1440 TTGGAATCCCCCCTTTAATTTGAAATGGTTTTCCGTACTTTGCATTGGCCTGCC-GTTGC 1498 Query 1760 TTTGGGCCCCCATGAATTCCTTAAAGTGCT------TTAGATAGTGCGGATCGACGTCAT 1813 || || || | ||| | | | | |||| ||| ||| | |||| |||||||| Sbjct 1499 GCTGTGCGCCTACGAACTGTTGATAATGCTTTTTAATTAAATAATTCGGAGGGACGTCAT 1558 Query 1814 CAATGACGTTATACCATGACTCGTTGCTGTACACTTTAGGACTCAGATCTA 1864 | ||||||||||| |||| || || |||| ||| | | | | ||||| Sbjct 1559 CGATGACGTTATATCATGCATCATTTGAGTACGTTTTCGAATTAAAATCTA 1609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8657358174920