Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_030749.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq33 87.8 3e-14 seq77518 86.0 1e-13 seq5745 82.4 1e-12 seq1993 82.4 1e-12 seq4295 80.6 5e-12 >seq33 Length=454124 Score = 87.8 bits (96), Expect = 3e-14 Identities = 141/199 (71%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 1640 TCGAGGAATTCTTTATAA--CTGCTGTTGGGGCCAGGATTGCACAGGAAGATTGTCGGTA 1697 |||| ||| |||||||| | || | | ||||||||||| || | ||| || | Sbjct 403334 TCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAA 403275 Query 1698 TTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTCGTATTTGATTGCCAGTCCCGTTGGG 1757 | |||| ||||||||||||||| |||||||| || | |||||| ||||||| | || Sbjct 403274 TCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTA 403215 Query 1758 CCCCCATGAATTCTT--TAAAG-TGTTTGAGGAAGT---GGGGATCTACGTCATCAATGA 1811 | || | ||| | || ||| | | ||| | || | ||| ||||||||||||| Sbjct 403214 CGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGA 403155 Query 1812 CGTTGTACCAAGCATCGTT 1830 |||| ||||| || ||||| Sbjct 403154 CGTTATACCACGCGTCGTT 403136 >seq77518 Length=14724 Score = 86.0 bits (94), Expect = 1e-13 Identities = 121/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1670 CCAGGATTGCACAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1729 ||||||||||| || | ||| || || ||||||||||||||||||| ||| |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1730 TTCGTATTTGATTGCCAGTCCCGTTGGGCCCCCATGAATTCTT--TAAAG-TGTTTGAGG 1786 || | |||||| || |||| ||||| || || | ||| | || ||| | | ||| | Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1787 AAGT---GGGGATCTACGTCATCAATGACGTTGTACCAAGCATCGTT 1830 || | ||| || |||||||||||||| ||||| || ||||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq5745 Length=45059 Score = 82.4 bits (90), Expect = 1e-12 Identities = 122/171 (71%), Gaps = 14/171 (8%) Strand=Plus/Plus Query 1670 CCAGGATTGCACAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1729 ||||||||||| | | ||| || || || ||||||||||||||||| || ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1730 TTCGTATTTGATTGCCAGTCCCGTTGGGCCCCCATGAATTCTTTAAAGTGTTTG------ 1783 || | |||||| ||||| | | ||| || || ||||| | || | | ||||| Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1784 -AGGAAG-TGG--GGATCTACGTCATCAATGACGTTGTACCAAGCATCGTT 1830 | ||| ||| |||| ||||||||||||||| ||||| || ||||| Sbjct 43661 AAATAAGCTGGAGGGAT----GTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq1993 Length=81530 Score = 82.4 bits (90), Expect = 1e-12 Identities = 120/167 (72%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1670 CCAGGATTGCACAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTTCCGTAT 1729 ||||||||||| || | ||| || || ||| |||||||||||||||| || ||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1730 TTCGTATTTGATTGCCAGTCCCGTTGGGCCCCCATGAATTCTT--TAAAG-TGTTTGAGG 1786 || | |||||| ||||| | ||||| || | | ||| | || ||| | | ||| | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1787 AAGT---GGGGATCTACGTCATCAATGACGTTGTACCAAGCATCGTT 1830 || | ||| ||||||||||||||||| ||||| || | ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq4295 Length=67413 Score = 80.6 bits (88), Expect = 5e-12 Identities = 166/243 (68%), Gaps = 8/243 (3%) Strand=Plus/Minus Query 1673 GGATTGCACAGGAAGATTGTCGGTATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTC 1732 |||||| | || | |||| || ||||| |||||||||||| |||| || ||||| || Sbjct 46843 GGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTG 46784 Query 1733 GTATTTGATTGCCAGTCCCGTTGGGCCCCCATGAATTCTTT---AAAGTGTTTGAGGAAG 1789 | |||||| | ||| | |||||| | |||| ||||| | | | ||| | || Sbjct 46783 GCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAA 46724 Query 1790 TGGG---GATCTACGTCATCAATGACGTTGTACCAAGCATCGTTGCTGTAGACCTTTGGG 1846 | || || ||||||||| || ||||||||||| |||| || | | ||| | Sbjct 46723 TAGGATAGAGATACGTCATCTATAACGTTGTACCATGCATTATT-CGAAAATGATTTCGA 46665 Query 1847 CTT-AGATCCAAATGGCCACATAGATAGTTGTGTGGGCCTAGAGACCTAGCCCACATCGT 1905 || | ||||| ||| || ||||| ||||||| || ||||| ||||| || || Sbjct 46664 ATTAAAATCCATGAAGCCCATTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTGT 46605 Query 1906 CTT 1908 ||| Sbjct 46604 CTT 46602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8650964261940