Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_031448.1 Length=2632 Score E Sequences producing significant alignments: (Bits) Value seq5745 125 1e-25 seq33 111 3e-21 seq1993 102 1e-18 seq5493 95.1 2e-16 seq1010 93.3 7e-16 seq22495 91.5 2e-15 seq3283 91.5 2e-15 seq77518 86.0 1e-13 seq6801 86.0 1e-13 seq4295 86.0 1e-13 seq54129 80.6 4e-12 >seq5745 Length=45059 Score = 125 bits (138), Expect = 1e-25 Identities = 263/382 (69%), Gaps = 14/382 (4%) Strand=Plus/Plus Query 1456 TTGAATCTTGATAGAGGGGGGCGTTGAGGAAGACGAATTTTGCATTGTGTATCGTCCAC- 1514 ||||||| | |||||| |||| || || |||| |||| ||||| |||| ||| || Sbjct 43423 TTGAATCCT-ATAGAGAGGGGTGTCGATGAAGTGTAATTCAGCATTTTGTAAAGTCAACG 43481 Query 1515 -TGTCTAAGTGATGCGTTTTCCTCTTTGTCGAGGAAACATTTATAAC-TAGATCCCT--C 1570 | ||||| | || ||| ||| | || | ||| ||||||| || ||| | Sbjct 43482 ATTTCTAATT--TGAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACC 43539 Query 1571 ACCAGGATTGCAAAGCACGATGCATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTA 1630 ||||||||||||| |||||| ||||| || || ||||||||||||||||| |||||||| Sbjct 43540 CCCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTA 43599 Query 1631 -TTTGCAATTTGATTGCCAGTCTTTTTGAGCGCCAATCAATTCTTTCCAATGCTTTAACT 1689 ||||| |||||| ||||| | ||| || || || || | || |||| ||| Sbjct 43600 CTTTGC-ATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAA 43658 Query 1690 TTAGATAGTGGGGTGCTATGTCGTCAATGACGTTGTATTGCACATGGTTTGAATAGACCC 1749 ||| ||| || | ||||| ||||||||||| || | | ||| || || Sbjct 43659 TTAAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTT 43718 Query 1750 GTGAATTGAAATCTAGGTGGCCGCTCAAATAAT--TGTGGACCCCCAATGCACGTGCCCA 1807 ||||| ||||| | ||| | | ||||| |||||| ||||| | ||||||||| Sbjct 43719 TCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGA--CCCAACGAACGTGCCCA 43776 Query 1808 CATCGTCTTCCCCGTTCTAGAA 1829 | || || || |||||||| Sbjct 43777 AACTGTTTTACCGATTCTAGAA 43798 >seq33 Length=454124 Score = 111 bits (122), Expect = 3e-21 Identities = 258/379 (68%), Gaps = 15/379 (4%) Strand=Plus/Minus Query 1467 TAGAGGGGGGCGTTGAGGAAGACGAATTTTGCATTGTGTATCGTCCAC--TGTCTAAGTG 1524 || || |||| || || |||| ||||| |||||| |||| |||||| | || || | Sbjct 403409 TATAGAGGGGTGTCGATGAAGTGGAATTCTGCATTCTGTAAAGTCCACGATTTCCAATT- 403351 Query 1525 ATGCGTTTTCCTCTTTGTCGAGGAAACATTTATAACTAGATCCCT---CACCAGGATTGC 1581 || ||| ||| | |||| ||| ||||||| | | | || | |||||||||| Sbjct 403350 -TGAATTTGAATCTATATCGAAGAACGCTTTATAAG-ACAACTCTGGACCCCAGGATTGC 403293 Query 1582 AAAGCACGATGCATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTA-TTTGCAATTT 1640 |||||||||| ||||| || || | ||||||||||||||| || ||||| ||||| |||| Sbjct 403292 AAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGC-ATTT 403234 Query 1641 GATTGCCAGTCTTTTTGAGCGCCAATCAATTCTTTCCAATGCTTTAACTTTAGATAGTGG 1700 || ||||||| || |||| | || | || |||| ||| ||| ||| Sbjct 403233 GACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCT 403174 Query 1701 GGTGCTATGTCGTCAATGACGTTGTATTGCACATGGTTTGAATAGACCCGTGAATTGAAA 1760 || | | ||| ||||||||||| || | | | ||| || || | ||||| ||| Sbjct 403173 GGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTCGAATTCAAA 403114 Query 1761 TCTAGGTGGCCGCTCAAATAAT--TGTGGACCCCCAATGCACGTGCCCACATCGTCTTCC 1818 || | ||| | | |||| |||||| ||||| | ||||||||| | || || Sbjct 403113 TCCATAAAGCCCATTATGTAATTATGTGGA--CCCAACGAACGTGCCCAAACTGT-TTTT 403057 Query 1819 CCGTTCTAGAATCACCTTC 1837 | |||||||| ||||| Sbjct 403056 CAATTCTAGAAGGTCCTTC 403038 >seq1993 Length=81530 Score = 102 bits (112), Expect = 1e-18 Identities = 199/288 (69%), Gaps = 12/288 (4%) Strand=Plus/Minus Query 1555 TATAA--CTAGATCCCTCACCAGGATTGCAAAGCACGATGCATGGGATACCTCCTTTAAT 1612 ||||| ||||||||| ||||||||||||||||||| ||||| || || ||||||| Sbjct 74418 TATAAATCTAGATCCC----CAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAAT 74363 Query 1613 TTGAACTGGCTTGCCGTA-TTTGCAATTTGATTGCCAGTCTTTTTGAGCGCCAATCAATT 1671 ||||||||| |||||||| ||||| |||||| ||||| | ||| || | | || | Sbjct 74362 TTGAACTGGTTTGCCGTACTTTGC-ATTTGACTGCCAATTGCGTTGTGCTCATACGAACT 74304 Query 1672 CTTTCCAATGCTTTAACTTTAGATAGTGGGGTGCTATGTCGTCAATGACGTTGTATTGCA 1731 || |||| ||| ||| ||| || | | ||| ||||||||||| || | Sbjct 74303 GTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACG 74244 Query 1732 CATGGTTTGAATAGACCCGTGAATTGAAATCTAGGTGGCCGCTCAAATAAT--TGTGGAC 1789 | | ||| || || ||||| ||||| | ||| | | ||||| |||||| Sbjct 74243 CGTTGTTCGATTATGTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGA- 74185 Query 1790 CCCCAATGCACGTGCCCACATCGTCTTCCCCGTTCTAGAATCACCTTC 1837 ||||| | ||||| ||| | || || || |||||||| ||||| Sbjct 74184 -CCCAACGAACGTGTCCAAACTGTTTTACCGATTCTAGAAGGTCCTTC 74138 >seq5493 Length=32325 Score = 95.1 bits (104), Expect = 2e-16 Identities = 115/154 (75%), Gaps = 7/154 (5%) Strand=Plus/Minus Query 1575 GGATTGCAAAGCACGATGCATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTATTTG 1634 |||||||| | ||| || |||| ||| || | ||||||||||||||| || ||||| || Sbjct 31559 GGATTGCACATCACAATACATGTGATTCCACTTTTAATTTGAACTGGTTTACCGTACTTC 31500 Query 1635 CAATTTGATTGCCAGTCTTTTTGAGCGCCAATCAATTCTTTCCAATGCTTTAACTTT--A 1692 |||||||||||||| | ||||| | || | |||||||| |||| |||| | Sbjct 31499 ACATTTGATTGCCAGTTGTATTGAGACCTAAGTAGCTCTTTCCA--GCTT---CTTTGCA 31445 Query 1693 GATAGTGGGGTGCTATGTCGTCAATGACGTTGTA 1726 |||| |||| || ||| ||||||| |||||| Sbjct 31444 GATATGTCGGTGATACGTCATCAATGATGTTGTA 31411 >seq1010 Length=204159 Score = 93.3 bits (102), Expect = 7e-16 Identities = 155/220 (70%), Gaps = 8/220 (4%) Strand=Plus/Plus Query 1466 ATAGAGGGGGGCGTTGAGGAAGACGAATTTTGCATTGTGTATCGTCCACTGTCT--AAGT 1523 ||||| ||||| ||||| |||| ||||| | |||| || ||||| | | | || | Sbjct 36376 ATAGAAGGGGGTGTTGACAAAGAAGAATTCTACATTTCCTAATGTCCAGTTTTTCCAACT 36435 Query 1524 GATGCGTTTTCCTCTTTGTCGAGGAAACATTTATAACTAGATCCC---TCACCAGGATTG 1580 | ||| | |||| | ||| ||| ||||||| | || | || || |||||| Sbjct 36436 TAAA--TTTACATCTTGTTTGAGAAAAGATTTATACTAATATTCGGTGTC-CCTGGATTG 36492 Query 1581 CAAAGCACGATGCATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTATTTGCAATTT 1640 || |||||||| |||||||| | |||||||||||||| | || ||||| ||| || | Sbjct 36493 CAGAGCACGATACATGGGATTTCCTCTTTAATTTGAACTAGTTTACCGTACTTGACATGT 36552 Query 1641 GATTGCCAGTCTTTTTGAGCGCCAATCAATTCTTTCCAAT 1680 |||||||| | | | || | ||||| |||||||||| Sbjct 36553 GATTGCCAATTGTGCTAGGCCCTAATCAGCTCTTTCCAAT 36592 Score = 84.2 bits (92), Expect = 4e-13 Identities = 156/225 (69%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 1466 ATAGAGGGGGGCGTTGAGGAAGACGAATTTTGCATTGTGTATCGTCCACTG--TCTAAGT 1523 ||||| |||| || |||||||| ||||| |||||| || ||||| | || |||| Sbjct 41027 ATAGAAAGGGGTGTCGAGGAAGAAGAATTCTGCATTTCTTAATGTCCATTTCTTCAAAGT 40968 Query 1524 GATGCGTTTTCCTCTTTGTCGAGGAAACATTTATA--ACTAGATCCCTCACCAG-GATTG 1580 | ||| | || | || || ||| ||||||| | || | | || ||||| Sbjct 40967 TAAA--TTTACATCATGTTCTAGAAAAGATTTATACGAATATTTGGGTGTCCCTAGATTG 40910 Query 1581 CAAAGCACGATGCATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTATTTGCAATTT 1640 || |||||||| ||| |||| | ||||||||| |||||| || ||||| || |||| Sbjct 40909 CAGAGCACGATACATAGGATTCTCCCTTTAATTAAAACTGGTTTACCGTACTTAGCATTT 40850 Query 1641 GATTGCCAGTCTTTTTGAGCGCCAATCAATTCTTTCCAATGCTTT 1685 |||||||| | | || | | ||| | ||||||||||| ||| Sbjct 40849 GATTGCCAATTGTACTGGACCCTAATGAGCTCTTTCCAATGATTT 40805 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 2e-15 Identities = 193/279 (69%), Gaps = 17/279 (6%) Strand=Plus/Minus Query 1456 TTGAATCTTGATAGAGGGGGGCGTTGAGGAAGACGAATTTTGCATTGTGTATCGTCCAC- 1514 ||||||| | ||||||||||| || || |||| ||||| | |||| |||| ||||| Sbjct 482 TTGAATCCT-ATAGAGGGGGGTGTCGACGAAGTGGAATTCTACATTTTGTAAAGTCCAAG 424 Query 1515 -TGTCTAAGTGATGCGTTTTCCTCTTTGTCGAGGAAACATTTATAACTAGATCCCTCA-- 1571 | || || ||| || ||| || | ||| |||||| ||| ||| Sbjct 423 TTTTCCAAT--ATGAATTGGACTCCAAATCTAAGAATGTTTTATAG---GATAAATCAGG 369 Query 1572 -CCAGGATTGCAAAGCACGATGCATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTA 1630 |||||||||||||| ||||| | | | || || | ||||||||||||||| || ||||| Sbjct 368 TCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTA 309 Query 1631 -TTTGCAATTTGATTGCCAGTCTTTTTGAGCGCCAATCAATTCTTTCCAATGCT--TTAA 1687 ||||| ||| | ||||||| || ||||| | || | || ||||||| |||| Sbjct 308 CTTTGC-ATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAA 250 Query 1688 CTTTAGATAGTGGGGTGCTATGTCGTCAATGACGTTGTA 1726 ||| ||| | || | ||||| || |||||||| || Sbjct 249 --TTAAATAATTCGGAGGGATGTCATCGATGACGTTATA 213 >seq3283 Length=49157 Score = 91.5 bits (100), Expect = 2e-15 Identities = 193/279 (69%), Gaps = 17/279 (6%) Strand=Plus/Minus Query 1456 TTGAATCTTGATAGAGGGGGGCGTTGAGGAAGACGAATTTTGCATTGTGTATCGTCCAC- 1514 |||||| | |||| |||||| || || |||| ||||| |||||| |||| ||||| Sbjct 2395 TTGAATTCT-ATAGTGGGGGGTGTCGACGAAGTGGAATTCTGCATTTTGTAGAGTCCAAG 2337 Query 1515 -TGTCTAAGTGATGCGTTTTCCTCTTTGTCGAGGAAACATTTATAACTAGATCCCTCA-- 1571 | || || ||| || ||| || | ||| |||||| ||| ||| Sbjct 2336 TTTTCCAAT--ATGAATTGGACTCCAAATCCAAGAACGTTTTATAG---GATTGATCAGG 2282 Query 1572 -CCAGGATTGCAAAGCACGATGCATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTA 1630 |||||||||||||| ||||| | ||| || || ||||||||||||||||| || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1631 -TTTGCAATTTGATTGCCAGTCTTTTTGAGCGCCAATCAATTCTTTCCAATGCT--TTAA 1687 ||||| ||| | ||||| | | || ||||| | || | || |||||| |||| Sbjct 2221 CTTTGC-ATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1688 CTTTAGATAGTGGGGTGCTATGTCGTCAATGACGTTGTA 1726 ||| ||| | || | | |||||| |||||||| || Sbjct 2162 --TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATA 2126 >seq77518 Length=14724 Score = 86.0 bits (94), Expect = 1e-13 Identities = 190/277 (69%), Gaps = 10/277 (4%) Strand=Plus/Minus Query 1456 TTGAATCTTGATAGAGGGGGGCGTTGAGGAAGACGAATTTTGCATTGTGTATCGTCCACT 1515 |||| || | |||||| ||| || || |||| ||||| |||||| |||| |||||| Sbjct 2518 TTGAGTCCT-ATAGAGAAGGGTGTCGATGAAGTGGAATTCTGCATTTTGTAAAGTCCACG 2460 Query 1516 GTCT--AAGTGATGCGTTTTCCTCTTTGTCGAGGAAACATTTATAAC-TAGATCCCT--C 1570 | | || | || ||| ||| || | ||| ||||||| || ||| | Sbjct 2459 ATTTTCAATT--TGAATTTGAATCTAAATCCAAGAATGCTTTATAAGATAAATCTGGACC 2402 Query 1571 ACCAGGATTGCAAAGCACGATGCATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTA 1630 |||||||||||||| ||||| ||||| || || |||||||||||||||| || |||| Sbjct 2401 CCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTA 2342 Query 1631 -TTTGCAATTTGATTGCCAGTCTTTTTGAGCGCCAATCAATTCTTTCCAATGCTTTAACT 1689 |||||| ||||| || |||| ||| || || | || | || |||||||| Sbjct 2341 CTTTGCA-TTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAA 2283 Query 1690 TTAGATAGTGGGGTGCTATGTCGTCAATGACGTTGTA 1726 ||| ||| || | | || ||||||||||| || Sbjct 2282 TTAAATAAGCTGGAGGGACATCATCAATGACGTTATA 2246 >seq6801 Length=49729 Score = 86.0 bits (94), Expect = 1e-13 Identities = 146/205 (71%), Gaps = 19/205 (9%) Strand=Plus/Plus Query 1456 TTGAATCTTGATAGAGGGGGGCGTTGAGGAAGACGAATTTTGCATTGTGTATCGTCCAC- 1514 ||||||| | |||||||||| ||||| ||| |||||||||||| ||| ||||| Sbjct 46977 TTGAATCCT-ATAGAGGGGGT-GTTGACGAAATGGAATTTTGCATTTTGTCAAGTCCAAG 47034 Query 1515 -TGTCTAAGTGATGCGTTTTCCTCTTTGTCGAGGAAACATTTATAA-------CTAGATC 1566 | || || | || ||| | | || | ||| |||||| || || | Sbjct 47035 ATTTCCAATT--TGAATTTGAATATAAATCCAAGAACGCTTTATAGGACAAATCTGGACC 47092 Query 1567 CCTCACCAGGATTGCAAAGCACGATGCATGGGATACCTCCTTTAATTTGAACTGGCTTGC 1626 ||| |||| ||||||| ||||| ||||| || || ||||||||||||||||| |||| Sbjct 47093 CCT----AGGAGTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGGTTTGC 47148 Query 1627 CGTA-TTTGCAATTTGATTGCCAGT 1650 |||| ||||| |||||| ||| ||| Sbjct 47149 CGTACTTTGC-ATTTGACTGCTAGT 47172 >seq4295 Length=67413 Score = 86.0 bits (94), Expect = 1e-13 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 1575 GGATTGCAAAGCACGATGCATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTATTTG 1634 |||||| | |||||||| |||||||| || |||||||||||| |||| || ||||| ||| Sbjct 46843 GGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTG 46784 Query 1635 CAATTTGATTGCCAGTCTTTTTGAGCGCCAATCAATTCTTTCCAATGCTTTAACTTTAGA 1694 |||||| | ||| | | || || |||| | ||||| |||| ||| || | | Sbjct 46783 GCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAA 46724 Query 1695 TAGTGGGGTGCTATGTCGTCAATGACGTTGTA 1726 ||| | | || ||| || || |||||||| Sbjct 46723 TAGGATAGAGATACGTCATCTATAACGTTGTA 46692 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 4e-12 Identities = 126/176 (72%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 1572 CCAGGATTGCAAAGCACGATGCATGGGATACCTCCTTTAATTTGAACTGGCTTGCCGTA- 1630 |||||||||||||| ||||| | ||| || || ||||||||||||| ||| || ||||| Sbjct 2257 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCGTAC 2198 Query 1631 TTTGCAATTTGATTGCCAGTCTTTTTGAGCGCCAATCAATTCTTTCCAATGCT--TTAAC 1688 ||||| ||| | || |||| | || ||||| | || | || |||||| |||| Sbjct 2197 TTTGC-ATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTAA- 2140 Query 1689 TTTAGATAGTGGGGTGCTATGTCGTCAATGACGTTGTATTGCACATGGTTTGAATA 1744 ||| ||| | || | | ||||| |||||||| || |||| ||||| || Sbjct 2139 -TTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATTTGAGTA 2085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8305692961020