Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_031466.1 Length=2759 Score E Sequences producing significant alignments: (Bits) Value seq3283 111 3e-21 seq3439 105 1e-19 seq22495 91.5 3e-15 seq953 84.2 4e-13 seq5745 80.6 5e-12 seq33 80.6 5e-12 seq54129 78.8 2e-11 seq77518 77.0 6e-11 seq815 77.0 6e-11 >seq3283 Length=49157 Score = 111 bits (122), Expect = 3e-21 Identities = 225/332 (68%), Gaps = 8/332 (2%) Strand=Plus/Minus Query 1604 GAATTCTGCATTCTTTAATGACCA-GTCTTTGAGTGCAGAATTTTTATCCTCATCCAAGT 1662 |||||||||||| | || | ||| || || | | ||||| ||| ||||||| Sbjct 2362 GAATTCTGCATTTTGTAGAGTCCAAGTTTTCCAATAT-GAATTGGACTCCAAATCCAAGA 2304 Query 1663 ACTCTTTGTATGATGACGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTT 1722 || ||| || ||| ||||| |||||||| || | |||| | ||||| || |||| Sbjct 2303 ACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTT 2244 Query 1723 TAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGTGCCCCCATAA 1782 ||||||||| || ||||||||||||| ||| ||||| | | ||||| || | | Sbjct 2243 TAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGA 2184 Query 1783 ATTCTTTAAAATGCT------TTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACC 1836 | | || | |||||| ||| || | || |||||| || |||||||| |||| Sbjct 2183 ACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACC 2124 Query 1837 AGGCATCATTACTGTAGACTTTTGGGCTCAGGTCCAGATGTCCACATAAATAATTGTGTG 1896 | |||||||| ||| ||| | | | |||| | ||| || || ||||||| Sbjct 2123 ATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTG 2064 Query 1897 GGCCTAAAGACCTGGCCCACATTGTCTTCCCT 1928 ||||||| || | ||||| ||| |||||| Sbjct 2063 GGCCTAATGAACGAGCCCATGCTGTTTTCCCT 2032 >seq3439 Length=62978 Score = 105 bits (116), Expect = 1e-19 Identities = 191/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 1655 ATCCAAGTACTCTTTGTATGATGACGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1714 ||| ||| || ||| || ||| | ||||| ||||||| || | |||| | ||||| Sbjct 991 ATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 932 Query 1715 TCCACCTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGTGC 1774 || ||||||||||||| || || |||||||||| |||| ||||| | | ||||| Sbjct 931 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGC 872 Query 1775 CCCCATAAATTCTTTAAAATGCT------TTAGGTAGTGGGGGTCGACGTCATCAATGAC 1828 || | || | || | |||||| ||| || | || ||| ||||| ||||| Sbjct 871 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812 Query 1829 GTTGTACCAGGCATCATTACTGTAGACTTTTGGGCTCAGGTCCAGATGTCCACATAAATA 1888 ||| ||||| |||||||| ||| ||| | | | |||| | ||| || || Sbjct 811 GTTATACCATGCATCATTTGAGTACGTTTTGGAATTAAAATCCATAAATCCCATTATGTA 752 Query 1889 ATTGTGTGGGCCTAAAGACCTGGCCCACATTGTCTTCCCT 1928 |||||||||||||| || | ||||| ||| |||||| Sbjct 751 GTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTTTCCCT 712 >seq22495 Length=567 Score = 91.5 bits (100), Expect = 3e-15 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 1683 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1742 ||||| |||||||| || | |||| | |||| || | ||||||||||| || || ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1743 TACTTTGTGTTGCTTTGCCAGTCCCTTTGTGCCCCCATAAATTCTTTAAAATGCT----- 1797 ||||||| ||| ||||||| | ||||| || | || | || | |||||| Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1798 -TTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTAGACT 1856 ||| || | || || |||||| |||||||| ||||| |||||||| ||| | Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 191 Query 1857 TTTGGGCTCAGGTCCAGATGTCCACATAAATAATTGTGTGGGCCTAAAGA 1906 || | | | |||| | ||| || || |||||||||||||| || Sbjct 190 TTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141 >seq953 Length=224861 Score = 84.2 bits (92), Expect = 4e-13 Identities = 219/332 (66%), Gaps = 8/332 (2%) Strand=Plus/Plus Query 1604 GAATTCTGCATTCTTTAATGACCA-GTCTTTGAGTGCAGAATTTTTATCCTCATCCAAGT 1662 |||||||||||| | ||| | ||| || || | | ||||| ||| ||| ||| Sbjct 1761 GAATTCTGCATTTTGTAAAGTCCAAGTTTTCCAATAT-GAATTGGAATCTAAATCTAAGA 1819 Query 1663 ACTCTTTGTATGATGACGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTT 1722 | ||| || ||| | ||||| |||||||| | | |||| | ||||| || |||| Sbjct 1820 ATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAATACGATACTTGGAATCCCGCCTT 1879 Query 1723 TAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGTGCCCCCATAA 1782 |||||||||| | || |||||||||| ||| ||||| | | ||| | || | | Sbjct 1880 TAATTTGAATTGATTTTCCGTACTTTGCATTGACCTGCCAATGTCGCTGTACGCCTACGA 1939 Query 1783 ATTCTTTAAAATGCT------TTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACC 1836 | | || | ||| || ||| || | || |||||| || || ||||| |||| Sbjct 1940 ACTGTTGATAATACTTTTTAATTAAATAATTCGGAGGGACGTCGTCGATAACGTTATACC 1999 Query 1837 AGGCATCATTACTGTAGACTTTTGGGCTCAGGTCCAGATGTCCACATAAATAATTGTGTG 1896 | |||||||| ||| ||| | | | |||| | || || || ||||||| Sbjct 2000 ATGCATCATTTGAGTACGTTTTCGAATTAAAATCCATAAATCTCATTATGTAGTTGTGTG 2059 Query 1897 GGCCTAAAGACCTGGCCCACATTGTCTTCCCT 1928 ||||||| || | ||||| ||| |||||| Sbjct 2060 GGCCTAATGAACGAGCCCATGCTGTTTTCCCT 2091 >seq5745 Length=45059 Score = 80.6 bits (88), Expect = 5e-12 Identities = 198/298 (66%), Gaps = 13/298 (4%) Strand=Plus/Plus Query 1641 GAATTTTTATCCTCATCCAAGTACTCTTTGTATGATGACGTTGGTCCT---GGATTGCAG 1697 |||||| ||| ||| ||| || |||| || ||| | ||| || |||||||| Sbjct 43493 GAATTTGAATCTATATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAA 43552 Query 1698 AGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTT 1757 | | |||| ||||| |||||||||||||||| || || |||||||||| || Sbjct 43553 ATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGAC 43612 Query 1758 TGCCAGTCCCTTTGTGCCCCCATAAATTCTTTAAAATG--CTTTAGGTA------GTGGG 1809 ||||| | | |||||| || || || | || | |||| |||| || ||| Sbjct 43613 TGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGA 43672 Query 1810 GGTCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTAGACTTTTGGGCTCAGGT 1869 || || ||||||||||||||| ||||| || || || || ||| | ||| | Sbjct 43673 GG--GATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTCGAATTCAAAT 43730 Query 1870 CCAGATGTCCACATAAATAATTGTGTGGGCCTAAAGACCTGGCCCACATTGTCTTCCC 1927 ||| | || || |||||| ||||| || || || | ||||| | ||| || || Sbjct 43731 CCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAACTGTTTTACC 43788 >seq33 Length=454124 Score = 80.6 bits (88), Expect = 5e-12 Identities = 171/253 (68%), Gaps = 12/253 (5%) Strand=Plus/Minus Query 1604 GAATTCTGCATTCTTTAATGACCAGTCTTTGAGTGCAGAATTTTTATCCTCATCCAAGTA 1663 |||||||||||||| ||| | ||| ||| |||||| ||| ||| ||| | Sbjct 403386 GAATTCTGCATTCTGTAAAGTCCACGATTTCCAATTTGAATTTGAATCTATATCGAAGAA 403327 Query 1664 CTCTTTGTATGATGACGTTGGTCCT--GGATTGCAGAGGAAGATAGTGGGAATTCCACCT 1721 | |||| || || || ||| || |||||||| || | |||| ||||| || | | Sbjct 403326 CGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAATCCCGCTT 403267 Query 1722 TTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGTGCCCCCATA 1781 |||||||||| || || |||||||||| || ||||||| | ||| | || | Sbjct 403266 TTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTACGCCTACG 403207 Query 1782 AATTCTTTAAAATG--CTTTAGGTA------GTGGGGGTCGACGTCATCAATGACGTTGT 1833 || | || | |||| |||| || ||| || |||||||||||||||||| | Sbjct 403206 AACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGG--GACGTCATCAATGACGTTAT 403149 Query 1834 ACCAGGCATCATT 1846 |||| || || || Sbjct 403148 ACCACGCGTCGTT 403136 >seq54129 Length=2260 Score = 78.8 bits (86), Expect = 2e-11 Identities = 119/170 (70%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1683 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1742 ||||| |||||||| || | |||| | ||||| || |||||||||||||| || || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1743 TACTTTGTGTTGCTTTGCCAGTCCCTTTGTGCCCCCATAAATTCTTTAAAATGCT----- 1797 ||||||| ||| || |||| ||||| || | || | || |||||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1798 -TTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATT 1846 ||| || | || ||| || || |||||||| ||||| ||||||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 >seq77518 Length=14724 Score = 77.0 bits (84), Expect = 6e-11 Identities = 173/255 (68%), Gaps = 15/255 (6%) Strand=Plus/Minus Query 1604 GAATTCTGCATTCTTTAATGACCA-GTCTTTGAGTGCAGAATTTTTATCCTCATCCAAGT 1662 |||||||||||| | ||| | ||| | ||| | | |||||| ||| ||||||| Sbjct 2485 GAATTCTGCATTTTGTAAAGTCCACGATTTTCAATTT-GAATTTGAATCTAAATCCAAGA 2427 Query 1663 ACTCTTTGTATGATGACGTTGGTCCT---GGATTGCAGAGGAAGATAGTGGGAATTCCAC 1719 | |||| || ||| | ||| || |||||||| || | |||| ||||| || | Sbjct 2426 ATGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGC 2367 Query 1720 CTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGTGCCCCCA 1779 |||||||||||| | || ||||||||| || || |||| | |||||| || | Sbjct 2366 CTTTAATTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTA 2307 Query 1780 TAAATTCTTTAAAATGC--TTTAGGTA------GTGGGGGTCGACGTCATCAATGACGTT 1831 || | || | ||||| |||| || ||| || ||| |||||||||||||| Sbjct 2306 CGAACTGTTGATAATGCTTTTTAATTAAATAAGCTGGAGG--GACATCATCAATGACGTT 2249 Query 1832 GTACCAGGCATCATT 1846 ||||| || || || Sbjct 2248 ATACCACGCGTCGTT 2234 >seq815 Length=151552 Score = 77.0 bits (84), Expect = 6e-11 Identities = 168/252 (67%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 1683 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGCTTCCCG 1742 ||||| |||||||| || | ||| | ||||| || |||||||||||| ||| || || Sbjct 85424 GGTCCAGGATTGCAAAGTACAATACTTGGAATCCCGCCTTTAATTTGACCGGGTTTTTCG 85365 Query 1743 TACTTTGTGTTGCTTTGCCAGTCCCTTTGTGCCCCCATAAATTCTTTAAAATGCT----- 1797 ||||||| ||| | ||||| | ||||| || | || | || | ||| || Sbjct 85364 TACTTTGCATTGGCCTTCCAGTTGCGCTGTGCGCCTACGAACTATTGATAATACTTCTAA 85305 Query 1798 -TTAGGTAGTGGGGGTCGACGTCATCAATGACGTTGTACCAGGCATCATTACTGTAGACT 1856 ||| || | | |||||| || |||||||| ||||| |||||||| ||| | Sbjct 85304 ATTAAATAATTCAGAGAGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 85245 Query 1857 TTTGGGCTCAGGTCCAGATGTCCACATAAATAATTGTGTGGGCCTAAAGACCTGGCCCAC 1916 || | | | |||| | ||| || || ||||||| |||||| | | ||||| Sbjct 85244 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGTGCCTAATAAACGAGCCCAT 85185 Query 1917 ATTGTCTTCCCT 1928 || | |||||| Sbjct 85184 GTTATTTTCCCT 85173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8711706435250