Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_031760.1 Length=2753 Score E Sequences producing significant alignments: (Bits) Value seq5745 105 1e-19 seq3283 105 1e-19 seq22495 98.7 2e-17 seq33 98.7 2e-17 seq77518 96.9 6e-17 seq4104 96.9 6e-17 seq1993 91.5 3e-15 seq442 91.5 3e-15 seq30129 89.7 9e-15 seq3059 89.7 9e-15 seq35612 87.8 3e-14 seq3439 87.8 3e-14 seq80468 84.2 4e-13 seq54129 80.6 5e-12 seq6801 80.6 5e-12 >seq5745 Length=45059 Score = 105 bits (116), Expect = 1e-19 Identities = 146/201 (73%), Gaps = 9/201 (4%) Strand=Plus/Plus Query 1654 ATCCAAAAACTCTTTATAGCTTGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1710 ||| || ||| ||||||| | ||| || || |||||||| | | |||| || Sbjct 43507 ATCTAAGAACGCTTTATAAGATAAATCTGGACCCCCAGGATTGCAAATCACGATACATGG 43566 Query 1711 AATTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTG 1770 ||| || ||||||||||||||||| || ||||| |||| |||||| ||||| | ||| Sbjct 43567 AATCCCACCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCCAATTGCATTG 43626 Query 1771 GGCCCCCATGAACTCTT--TAAAGTGCTTTAGGTA---ATGCGGGGTCGA-GTCATCAAT 1824 || || ||||||| || ||| || |||| || | || || || ||||||||| Sbjct 43627 TGCTCCTATGAACTGTTGATAATGTTTTTTAATTAAATAAGCTGGAGGGATGTCATCAAT 43686 Query 1825 GACGTTAAACCAGGCGTCGTT 1845 ||||||| |||| |||||||| Sbjct 43687 GACGTTATACCATGCGTCGTT 43707 >seq3283 Length=49157 Score = 105 bits (116), Expect = 1e-19 Identities = 142/198 (72%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1654 ATCCAAAAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1713 |||||| ||| ||||||| | || ||||| |||||||| || | |||| | ||||| Sbjct 2311 ATCCAAGAACGTTTTATAGGATTGATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2252 Query 1714 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGC 1773 |||||||||||||||||||| |||||||| |||| ||| | ||||| | || || Sbjct 2251 CCCGCCTTTAATTTGAACTGGTTTCCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2192 Query 1774 CCCCATGAACTCTTTAAAGTGCT------TTAGGTAATGCGGGGTCGAGTCATCAATGAC 1827 || | ||||| || | | |||| ||| |||| ||| | ||| || ||||| Sbjct 2191 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACGTCGTCGATGAC 2132 Query 1828 GTTAAACCAGGCGTCGTT 1845 |||| |||| || || || Sbjct 2131 GTTATACCATGCATCATT 2114 >seq22495 Length=567 Score = 98.7 bits (108), Expect = 2e-17 Identities = 133/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Minus Query 1666 TTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAAT 1725 ||||||| | ||| ||||| |||||||| || | |||| | |||| |||| |||||| Sbjct 386 TTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAAT 327 Query 1726 TTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAACTC 1785 ||||||||| || ||||| |||| ||| | ||||||| || || || | ||||| Sbjct 326 TTGAACTGGTTTTCCGTACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTG 267 Query 1786 TTTAAAGTGCT------TTAGGTAATGCGGGGTCGAGTCATCAATGACGTTAAACCAGGC 1839 || | | |||| ||| |||| ||| | |||||| ||||||||| |||| || Sbjct 266 TTGACAATGCTTCTTAATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGC 207 Query 1840 GTCGTT 1845 || || Sbjct 206 ATCATT 201 >seq33 Length=454124 Score = 98.7 bits (108), Expect = 2e-17 Identities = 165/236 (70%), Gaps = 6/236 (3%) Strand=Plus/Minus Query 1685 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1744 || |||||||| || | |||| ||||| |||| ||||||||||||||| || ||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1745 TTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAACTCTT--TAAAGTGCTTTAGGT 1802 |||| |||||| ||||||| || | || | ||||| || ||| | |||| | Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1803 A---ATGCGGGGTCGA-GTCATCAATGACGTTAAACCAGGCGTCGTTACTGTATACCCTT 1858 | | || || || |||||||||||||||| |||| |||||||| |||| || Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTC 403123 Query 1859 GGGCTCAGATCTAGATGTCCACACAGATAATTATGTGGACCTAATGATCTGGCCCA 1914 | ||| ||| | | || | |||||||||||||| || || | ||||| Sbjct 403122 GAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq77518 Length=14724 Score = 96.9 bits (106), Expect = 6e-17 Identities = 173/247 (70%), Gaps = 13/247 (5%) Strand=Plus/Minus Query 1610 GCATTCTTTAAAGCCCA--ATTTTTTAGTGCAGAATTCTTCTCTTCATCCAAAAACTCTT 1667 ||||| | ||||| ||| ||||| | | ||||| ||| |||||| || ||| Sbjct 2478 GCATTTTGTAAAGTCCACGATTTTCAATTT--GAATTTGAATCTAAATCCAAGAATGCTT 2421 Query 1668 TATAGCTTGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAA 1724 |||| | ||| || || |||||||| || | |||| ||||| |||||||||| Sbjct 2420 TATAAGATAAATCTGGACCCCCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAA 2361 Query 1725 TTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAACT 1784 ||||||||| || |||| |||| |||||| || |||| ||| || || | ||||| Sbjct 2360 TTTGAACTGATTTTTCGTACTTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACT 2301 Query 1785 CTTTAAAGTGC--TTTAGGTA---ATGCGGGGTCGA-GTCATCAATGACGTTAAACCAGG 1838 || | | ||| |||| || | || || || ||||||||||||||| |||| | Sbjct 2300 GTTGATAATGCTTTTTAATTAAATAAGCTGGAGGGACATCATCAATGACGTTATACCACG 2241 Query 1839 CGTCGTT 1845 ||||||| Sbjct 2240 CGTCGTT 2234 >seq4104 Length=64936 Score = 96.9 bits (106), Expect = 6e-17 Identities = 80/98 (82%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 1654 ATCCAAAAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1713 |||||| ||| ||||||| | ||| |||||| |||||||| || | |||| | ||||| Sbjct 20858 ATCCAAGAACGTTTTATAGGATAAATCGGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20799 Query 1714 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTAT 1751 |||||||||||||||||||| || ||||| |||| || Sbjct 20798 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCAT 20761 >seq1993 Length=81530 Score = 91.5 bits (100), Expect = 3e-15 Identities = 122/167 (73%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1685 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCGTAT 1744 || |||||||| || | |||| ||||| ||| |||||||||||||||| || ||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1745 TTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAACTCTT--TAAAGTGCTTTAGGT 1802 |||| |||||| ||||| | ||| || | | ||||| || ||| | |||| | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1803 A---ATGCGGGGTCGA-GTCATCAATGACGTTAAACCAGGCGTCGTT 1845 | | || || || |||||||||||||||| |||| |||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq442 Length=237535 Score = 91.5 bits (100), Expect = 3e-15 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 1654 ATCCAAAAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1713 |||||| || ||||||| | |||| ||||| |||||||| || |||| | ||||| Sbjct 22750 ATCCAAGAATGTTTTATAGGATAAATTAGGTCCAGGATTGCAAAGTTCGATACTTGGAAT 22809 Query 1714 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGC 1773 |||||||||||||||||| || ||||| |||| ||| | ||| ||| ||| || Sbjct 22810 CTCGCCTTTAATTTGAACTGATTTTCCGTACTTTGCATTGGCCTGCTAGTGTCGTTGTGC 22869 Query 1774 CCCCATGAACTCTTTAAAGTGCTTT 1798 || | ||||| || | | |||||| Sbjct 22870 GCCTACGAACTGTTAATAATGCTTT 22894 >seq30129 Length=3650 Score = 89.7 bits (98), Expect = 9e-15 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 1654 ATCCAAAAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1713 |||||| ||| ||| ||| | ||| ||||| |||||||| || | |||| | ||||| Sbjct 2343 ATCCAAGAACGTTTTTTAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 2402 Query 1714 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGC 1773 |||||||||||||||||| | || ||||| |||| ||| | ||||| | || || Sbjct 2403 CCCGCCTTTAATTTGAACTCGTTTTCCGTACTTTGCATTGGCCTGCCAATTTCGCTGTGC 2462 Query 1774 CCCCATGAACTCTTTAAAGTGCTT 1797 || | ||||| || | | ||||| Sbjct 2463 GCCTACGAACTGTTGATAATGCTT 2486 >seq3059 Length=182465 Score = 89.7 bits (98), Expect = 9e-15 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 1654 ATCCAAAAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1713 |||||| ||| ||||| | | ||| ||||| |||||||| || | |||| | ||||| Sbjct 20447 ATCCAAGAACGTTTTATCGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 20388 Query 1714 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGC 1773 |||||||||||||||| ||| || ||||| |||| ||| | | ||||| || || Sbjct 20387 CCCGCCTTTAATTTGAATTGGTTTTCCGTAATTTGCATTGGCCTACCAGTTGCGCTGTGC 20328 Query 1774 CCCCATGAACTCTTTAAAGTGCTT 1797 || | ||||| || | | ||||| Sbjct 20327 GCCTACGAACTGTTGATAATGCTT 20304 >seq35612 Length=1588 Score = 87.8 bits (96), Expect = 3e-14 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1654 ATCCAAAAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1713 |||||| || ||||||| | ||| ||||| |||||||| || | |||| | ||||| Sbjct 1479 ATCCAAGAATGTTTTATAGGATAAATCAGGTCCAGGATTGCAAAGTACGATACTTGGAAT 1538 Query 1714 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCA 1761 |||||||||||||||||||| || ||||| |||| || | ||||| Sbjct 1539 GCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCCTGCCA 1586 >seq3439 Length=62978 Score = 87.8 bits (96), Expect = 3e-14 Identities = 138/198 (70%), Gaps = 6/198 (3%) Strand=Plus/Minus Query 1654 ATCCAAAAACTCTTTATAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAAT 1713 ||| || ||| ||||||| | | | ||||| ||||||| || | |||| | ||||| Sbjct 991 ATCTAAGAACGTTTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAAT 932 Query 1714 TCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGC 1773 |||||||||||||||||||| || ||||| |||| || | ||||| | || || Sbjct 931 CCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGC 872 Query 1774 CCCCATGAACTCTTTAAAGTGCT------TTAGGTAATGCGGGGTCGAGTCATCAATGAC 1827 || | ||||| || | | |||| ||| |||| ||| | ||||| ||||| Sbjct 871 GCCTACGAACTGTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGAC 812 Query 1828 GTTAAACCAGGCGTCGTT 1845 |||| |||| || || || Sbjct 811 GTTATACCATGCATCATT 794 >seq80468 Length=4946 Score = 84.2 bits (92), Expect = 4e-13 Identities = 132/188 (70%), Gaps = 1/188 (1%) Strand=Plus/Plus Query 1610 GCATTCTTTAAAGCCCAATTTTTTAGTGCAGAATTCTTCTCTTCATCCAAAAACTCTTTA 1669 ||||| | ||||| |||| |||| ||||| ||| || ||| || |||| Sbjct 4194 GCATTTTGTAAAGTCCAAGTTTTCCAATATGAATTGGACTCCATATTCAAGAATGTTTTA 4253 Query 1670 TAGCTTGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGA 1729 ||| | ||| ||||| ||||||| || | |||| | ||||||||||||||||| ||| Sbjct 4254 TAGGATAAATCAGGTCCAAGATTGCAAAGTACGATACTTGGAATTCCGCCTTTAATCTGA 4313 Query 1730 ACTGGCTTCCCGTATTTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAACTCTTTA 1789 || || || ||||| |||||||| | | ||| | | || || || | ||||| || | Sbjct 4314 ACAGGTTTTCCGTACTTTGTATTGGCCTACCA-TTGTGCTGTGCGCCTACGAACTGTTGA 4372 Query 1790 AAGTGCTT 1797 | ||||| Sbjct 4373 TAATGCTT 4380 >seq54129 Length=2260 Score = 80.6 bits (88), Expect = 5e-12 Identities = 114/161 (71%), Gaps = 6/161 (4%) Strand=Plus/Minus Query 1682 GGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTCCCG 1741 ||||| |||||||| || | |||| | ||||| |||||||||||||||| ||| || ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1742 TATTTTGTATTTGATTGCCAGTCCTTTTGGGCCCCCATGAACTCTTTAAAGTGCT----- 1796 || |||| ||| | || |||| | || || || | ||||| || | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1797 -TTAGGTAATGCGGGGTCGAGTCATCAATGACGTTAAACCA 1836 ||| |||| ||| | || || ||||||||| |||| Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCA 2100 >seq6801 Length=49729 Score = 80.6 bits (88), Expect = 5e-12 Identities = 86/113 (76%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 1654 ATCCAAAAACTCTTTATAGCTTGAATTGGGTCCT---GGATTGCAGAGGAAGATAGTGGG 1710 |||||| ||| |||||||| ||| || || ||| |||| || | |||| || Sbjct 47060 ATCCAAGAACGCTTTATAGGACAAATCTGGACCCCTAGGAGTGCAAAGTACGATACATGG 47119 Query 1711 AATTCCGCCTTTAATTTGAACTGGCTTCCCGTATTTTGTATTTGATTGCCAGT 1763 ||| |||||||||||||||||||| || ||||| |||| |||||| ||| ||| Sbjct 47120 AATCCCGCCTTTAATTTGAACTGGTTTGCCGTACTTTGCATTTGACTGCTAGT 47172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8692524696310