Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_031764.1 Length=2600 Score E Sequences producing significant alignments: (Bits) Value seq5745 105 1e-19 seq33 102 1e-18 seq1993 98.7 2e-17 seq77518 87.8 3e-14 seq3283 87.8 3e-14 seq4295 84.2 4e-13 seq22495 78.8 2e-11 >seq5745 Length=45059 Score = 105 bits (116), Expect = 1e-19 Identities = 178/258 (69%), Gaps = 0/258 (0%) Strand=Plus/Plus Query 1544 CCAGGATTGCAAAGCACGATTGATGGAATCCCCCCTTTAATAAGGACTGGCTTACCGTAC 1603 ||||||||||||| |||||| |||||||||| |||||||| | ||||| || |||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1604 TTGCAATTTGACTGCCACATCTTTTGAGCCCCTATCAATTCTTTCCAGTGCTTTAGCTTT 1663 || |||||||||||| | ||| || ||||| || | || | || ||| || Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1664 AGATAGTGCGGTGCGACGTCATCTATTACGTTATACTCCACTTCGTCTGAGAAAACCCGG 1723 | ||| || | || |||||| || ||||||||| | |||| || | Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTTCGATTATGTTTTC 43720 Query 1724 GAATTGAAGTCTAGGTGTCCACTGAGATAATTATGTGGGCCTAACGCACGTGCCCACATC 1783 ||||| || || | || | | |||||||||||| || |||| ||||||||| | Sbjct 43721 GAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGCCCAAACT 43780 Query 1784 GTCTTCCCCGTCCTAGAA 1801 || || || | |||||| Sbjct 43781 GTTTTACCGATTCTAGAA 43798 >seq33 Length=454124 Score = 102 bits (112), Expect = 1e-18 Identities = 164/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1544 CCAGGATTGCAAAGCACGATTGATGGAATCCCCCCTTTAATAAGGACTGGCTTACCGTAC 1603 |||||||||||||||||||| |||||||||| | |||||| | ||||| || |||||| Sbjct 403302 CCAGGATTGCAAAGCACGATACATGGAATCCCGCTTTTAATTTGAACTGGTTTTCCGTAC 403243 Query 1604 TTGCAATTTGACTGCCACATCTTTTGAGCCCCTATCAATTCTTTCCAGTGCTTTAGCTTT 1663 || |||||||||||| | || | |||| || | || | || ||| || Sbjct 403242 TTTGCATTTGACTGCCAGTTGCACTGTACGCCTACGAACTGTTGATAATGATTTTTAATT 403183 Query 1664 AGATAGTGCGGTGCGACGTCATCTATTACGTTATACTCCACTTCGTCTGAGAAAACCCGG 1723 | ||| || | ||||||||| || ||||||||| | | |||| ||| | | Sbjct 403182 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTCTC 403123 Query 1724 GAATTGAAGTCTAGGTGTCCACTGAGATAATTATGTGGGCCTAACGCACGTGCCCA 1779 ||||| || || | || | | ||||||||||| || |||| ||||||||| Sbjct 403122 GAATTCAAATCCATAAAGCCCATTATGTAATTATGTGGACCCAACGAACGTGCCCA 403067 >seq1993 Length=81530 Score = 98.7 bits (108), Expect = 2e-17 Identities = 183/269 (68%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 1541 TCACCAGGATTGCAAAGCACGATTGATGGAATCCCCCCTTTAATAAGGACTGGCTTACCG 1600 || |||||||||||||||||||| |||||||||| ||||||| | ||||| || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1601 TACTTGCAATTTGACTGCCACATCTTTTGAGCCCCTATCAATTCTTTCCAGTGCTTTAGC 1660 ||||| |||||||||||| | ||| || | || || | || | || ||| Sbjct 74346 TACTTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTA 74287 Query 1661 TTTAGATAGTGCGGTGCGACGTCATCTATTACGTTATACTCCACTTCGTCTGAGAAAACC 1720 ||| ||| || | ||||||||| || ||||||||| | | | || || | Sbjct 74286 ATTAAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTTCGATTATGTT 74227 Query 1721 CGGGAATTGAAGTCTAGGTGTCCACTGAGATAATTATGTGGGCCTAACGCACGTGCCCAC 1780 ||||| || || | || | | |||||||||||| || |||| ||||| ||| Sbjct 74226 TTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACGTGTCCAA 74167 Query 1781 ATCGTCTTCCCCGTCCTAGAATCACCTTC 1809 | || || || | |||||| ||||| Sbjct 74166 ACTGTTTTACCGATTCTAGAAGGTCCTTC 74138 >seq77518 Length=14724 Score = 87.8 bits (96), Expect = 3e-14 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1544 CCAGGATTGCAAAGCACGATTGATGGAATCCCCCCTTTAATAAGGACTGGCTTACCGTAC 1603 |||||||||||||| ||||| |||||||||| |||||||| | |||| || ||||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1604 TTGCAATTTGACTGCCACATCTTTTGAGCCCCTATCAATTCTTTCCAGTGCTTTAGCTTT 1663 || ||||||||| || | ||| || |||| || | || | |||||| || Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1664 AGATAGTGCGGTGCGACGTCATCTATTACGTTATACTCCACTTCGTCTGAGAAAACCCGG 1723 | ||| || | ||| ||||| || ||||||||| | | |||| ||| | Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTTCGAGTATGTTTTC 2221 Query 1724 GAATTGAAGTCTAGGTGTCCACTGAGATAATTATGTGGGCCTAACGCACGTGCCCA 1779 |||| || || | || | | |||||||||||| || ||| ||||||||| Sbjct 2220 AAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACTAACGTGCCCA 2165 >seq3283 Length=49157 Score = 87.8 bits (96), Expect = 3e-14 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 1544 CCAGGATTGCAAAGCACGATTGATGGAATCCCCCCTTTAATAAGGACTGGCTTACCGTAC 1603 |||||||||||||| ||||| ||||||||| |||||||| | ||||| || |||||| Sbjct 2280 CCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTAC 2221 Query 1604 TTGCAATTTGACTGCCACATCTTTTGAGCCCCTATCAATTCTTTCCAGTGCTTTAGCTTT 1663 || ||| | |||||| | || || |||| || | || | ||||| || Sbjct 2220 TTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATT 2161 Query 1664 AGATAGTGCGGTGCGACGTCATCTATTACGTTATACTCCACTTCGTCTGAGAAAACCCGG 1723 | ||| | ||| | |||||| || || ||||||||| | || | |||| | | Sbjct 2160 AAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTTTG 2101 Query 1724 GAATTGAAGTCTAGGTGTCCACTGAGATAATTATGTGGGCCTAACGCACGTGCCCA 1779 ||||| || || | ||| | | || || ||||||||||| | ||| ||||| Sbjct 2100 GAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq4295 Length=67413 Score = 84.2 bits (92), Expect = 4e-13 Identities = 167/244 (68%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 1547 GGATTGCAAAGCACGATTGATGGAATCCCCCCTTTAATAAGGACTGGCTTACCGTACTTG 1606 |||||| | ||||||||| |||| || ||||||||||| | |||| |||||||||||| Sbjct 46843 GGATTGTAGAGCACGATTCATGGGATTCCCCCTTTAATTTGATCTGGTTTACCGTACTTG 46784 Query 1607 CAATTTGACTGCCACATCTTTTGAGCCCCTATCAATTCTTTCCAGTGCTTTAGCTTTAGA 1666 |||||| | ||| | | || ||| | || | ||||| || | ||| || | | Sbjct 46783 GCATTTGAGTTCCAATTGTACTGGGCCACAATGAGCTCTTTTCAATATTTTTTCTGCAAA 46724 Query 1667 TAGTGCGGTGCGACGTCATCTATTACGTTATAC--TCCACTTCGTCTGAGAAAACCCGGG 1724 ||| | | ||||||||||| ||||| ||| | || || || || || | Sbjct 46723 TAGGATAGAGATACGTCATCTATAACGTTGTACCATGCA-TTATTC-GAAAATGATTTCG 46666 Query 1725 AATTGAAGTCTAGGTGTCCACTGAGATAATTATGTGGGCCTAACGCACGTGCCCACATCG 1784 |||| || || | | || | | || |||||||||| ||| | |||||||| || | Sbjct 46665 AATTAAAATCCATGAAGCCCATTATGTAGTTATGTGGGCATAAAGACCGTGCCCATATTG 46606 Query 1785 TCTT 1788 |||| Sbjct 46605 TCTT 46602 >seq22495 Length=567 Score = 78.8 bits (86), Expect = 2e-11 Identities = 111/156 (71%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 1544 CCAGGATTGCAAAGCACGATTGATGGAATCCCCCCTTTAATAAGGACTGGCTTACCGTAC 1603 |||||||||||||| ||||| | ||||||| | |||||| | ||||| || |||||| Sbjct 367 CCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCGTAC 308 Query 1604 TTGCAATTTGACTGCCACATCTTTTGAGCCCCTATCAATTCTTTCCAGTGCTTTAGCTTT 1663 || ||| | |||||| | || || |||| || | || || ||||| || Sbjct 307 TTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTAATT 248 Query 1664 AGATAGTGCGGTGCGACGTCATCTATTACGTTATAC 1699 | ||| | ||| | || |||||| || ||||||||| Sbjct 247 AAATAATTCGGAGGGATGTCATCGATGACGTTATAC 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8203390353340