Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_033334.1 Length=2781 Score E Sequences producing significant alignments: (Bits) Value seq3439 122 2e-24 seq3283 122 2e-24 seq1993 89.7 9e-15 >seq3439 Length=62978 Score = 122 bits (134), Expect = 2e-24 Identities = 196/282 (70%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 1709 GATTGCAGAGAAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTAC 1768 ||||||| || | |||| | ||||| || ||||||||||||||||| |||||||| || Sbjct 956 GATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCGTACTTTG 897 Query 1769 AGTTGCTTTGCCAGTCCTTCTGGGCCCCCATAAATTCTTTAAAGTGCT------TTAGGT 1822 |||| ||||| | ||| || || | || | || | | |||| ||| | Sbjct 896 CGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAATTAAAT 837 Query 1823 ATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACTTTTGGAC 1882 | | || ||| ||||| |||||||||||||| ||| || ||| ||| | | Sbjct 836 AATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTTTTGGAAT 777 Query 1883 TCAAGTCCAGGTGTCCACACAAATAATTATGAGGACCTAATGACCGAGCCCATACTGTTT 1942 | || |||| ||| | || || || || |||||||| ||||||||| |||||| Sbjct 776 TAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATGCTGTTT 717 Query 1943 TTCCTATTCTACTTGGGCCTTCTATAACTATACTTATGGGCC 1984 | |||||||| ||||||||| |||| || || ||||||| Sbjct 716 TCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 675 >seq3283 Length=49157 Score = 122 bits (134), Expect = 2e-24 Identities = 201/288 (70%), Gaps = 8/288 (3%) Strand=Plus/Minus Query 1704 TCCTGGATTGCAGAGAAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTA 1763 ||| |||||||| || | |||| | ||||| || ||||||||||||||||| || ||||| Sbjct 2281 TCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCGTA 2222 Query 1764 -TTTACAGTTGCTTTGCCAGTCCTTCTGGGCCCCCATAAATTCTTTAAAGTGCT------ 1816 ||| || ||| ||||| | ||| || || | || | || | | |||| Sbjct 2221 CTTTGCA-TTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTAA 2163 Query 1817 TTAGGTATTGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCTATACACTT 1876 ||| || | || |||||| || |||||||||||||| ||| || ||| || Sbjct 2162 TTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTTT 2103 Query 1877 TTGGACTCAAGTCCAGGTGTCCACACAAATAATTATGAGGACCTAATGACCGAGCCCATA 1936 | | | | || |||| ||| | || || || || |||||||| ||||||||| Sbjct 2102 TGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCATG 2043 Query 1937 CTGTTTTTCCTATTCTACTTGGGCCTTCTATAACTATACTTATGGGCC 1984 ||||||| |||||||| ||||||||| |||| || || ||||||| Sbjct 2042 CTGTTTTCCCTATTCTTGATGGGCCTTCAATAATAATGCTCATGGGCC 1995 >seq1993 Length=81530 Score = 89.7 bits (98), Expect = 9e-15 Identities = 202/296 (68%), Gaps = 21/296 (7%) Strand=Plus/Minus Query 1702 TCTCCTGGATTGCAGAGAAAGATAGTGGGAATTCCACCTTTAATTTGAACTGGCTTTCCG 1761 || || |||||||| || | |||| ||||| || |||||||||||||||| || ||| Sbjct 74406 TCCCCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCG 74347 Query 1762 TA-TTTACAGTTGCTTTGCCAGT--CCTTCTGGGCCCCCATA--AATTCTTTAAAGTGCT 1816 || ||| || ||| | |||| | | || || | |||| || | || | | || | Sbjct 74346 TACTTTGCATTTGACT-GCCAATTGCGTTGTG----CTCATACGAACTGTTGATAATGAT 74292 Query 1817 TT------AGGTAT--TGGGGGTTGACGTCATCAATGACGTTATACCAAGCACTGTTGCT 1868 || | || ||| || |||||||||||||||||||||||| || |||| Sbjct 74291 TTTTAATTAAATAAGCTGGAGG--GACGTCATCAATGACGTTATACCACGCGTTGTTCGA 74234 Query 1869 ATACACTTTTGGACTCAAGTCCAGGTGTCCACACAAATAATTATGAGGACCTAATGACCG 1928 || ||| | | |||| |||| || | ||||||||| ||||| || || || Sbjct 74233 TTATGTTTTCGAATTCAAATCCATAAAGCCCATTATATAATTATGTGGACCCAACGAACG 74174 Query 1929 AGCCCATACTGTTTTTCCTATTCTACTTGGGCCTTCTATAACTATACTTATGGGCC 1984 | ||| |||||||| || |||||| || ||||| |||| || || |||||| Sbjct 74173 TGTCCAAACTGTTTTACCGATTCTAGAAGGTCCTTCAATAA-TAATTTTTTGGGCC 74119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8778596713350