Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_033554.1 Length=2738 Score E Sequences producing significant alignments: (Bits) Value seq3283 98.7 2e-17 seq33 96.9 6e-17 seq5745 95.1 2e-16 seq3439 95.1 2e-16 seq77518 91.5 3e-15 seq1993 91.5 3e-15 seq22495 87.8 3e-14 seq35612 77.0 6e-11 >seq3283 Length=49157 Score = 98.7 bits (108), Expect = 2e-17 Identities = 165/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1670 GGACCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGTTTCCCG 1729 || ||||||||||| || | ||| | || |||||||||||||||||||||||||||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1730 TATTTAGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGTT----- 1784 || || | |||| ||||| | | || || || | ||||| | | | || | Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 2164 Query 1785 -TGAGGAAATGCGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTACTGTAGACC 1843 | | ||| ||| |||||| || |||||||| ||||| || || || ||| Sbjct 2163 ATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTACGTT 2104 Query 1844 TTGGGACTTAAGTCTAAGTGTCCACATAGATAGTTATGTGGGCCTAGTGACCTAGCCCA 1902 |||| | | || || | ||| || ||||| |||||||||| ||| | |||||| Sbjct 2103 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 2045 >seq33 Length=454124 Score = 96.9 bits (106), Expect = 6e-17 Identities = 144/199 (72%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 1643 TCGAGGAATTCTTTATAA--CTGCTGTTGGGACCAGGATTGCAGAGGAAGATTGTCGGTA 1700 |||| ||| |||||||| | || | | ||||||||||| || | ||| || | Sbjct 403334 TCGAAGAACGCTTTATAAGACAACTCTGGACCCCAGGATTGCAAAGCACGATACATGGAA 403275 Query 1701 TCCCGCCTTTAATTTGAACTGGTTTCCCGTATTTAGTGTTGGATTGCCAGTCCCTTTGGG 1760 |||||| |||||||||||||||||| ||||| || | || || ||||||| | || Sbjct 403274 TCCCGCTTTTAATTTGAACTGGTTTTCCGTACTTTGCATTTGACTGCCAGTTGCACTGTA 403215 Query 1761 CCCCCATGAACTCCT--TAAAG-TGTTTGAGGAAAT--GC-GGGTCGACGTCATCAATGA 1814 | || | ||||| | ||| | | ||| | |||| || || |||||||||||||| Sbjct 403214 CGCCTACGAACTGTTGATAATGATTTTTAATTAAATAAGCTGGAGGGACGTCATCAATGA 403155 Query 1815 CGTTGTACCAGGCGTCGTT 1833 |||| ||||| |||||||| Sbjct 403154 CGTTATACCACGCGTCGTT 403136 >seq5745 Length=45059 Score = 95.1 bits (104), Expect = 2e-16 Identities = 124/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 1673 CCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGTTTCCCGTAT 1732 ||||||||||| | | ||| || ||||| |||||||||||||||||||| ||||| Sbjct 43541 CCAGGATTGCAAATCACGATACATGGAATCCCACCTTTAATTTGAACTGGTTTGCCGTAC 43600 Query 1733 TTAGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCT--TAAAG-TGTTTGAGG 1789 || | || || ||||| | | ||| || || ||||||| | ||| | | ||| | Sbjct 43601 TTTGCATTTGACTGCCAATTGCATTGTGCTCCTATGAACTGTTGATAATGTTTTTTAATT 43660 Query 1790 AAAT--GC-GGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTT 1833 |||| || || || ||||||||||||||| ||||| |||||||| Sbjct 43661 AAATAAGCTGGAGGGATGTCATCAATGACGTTATACCATGCGTCGTT 43707 >seq3439 Length=62978 Score = 95.1 bits (104), Expect = 2e-16 Identities = 164/239 (69%), Gaps = 6/239 (3%) Strand=Plus/Minus Query 1670 GGACCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGTTTCCCG 1729 || ||| ||||||| || | ||| | || |||||||||||||||||||||||||| ||| Sbjct 963 GGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTTCCG 904 Query 1730 TATTTAGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGTT----- 1784 || || | ||||| ||||| | | || || || | ||||| | | | || | Sbjct 903 TACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACTGTTGATAATGCTTCTTA 844 Query 1785 -TGAGGAAATGCGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTACTGTAGACC 1843 | | ||| ||| ||| ||||| |||||||| ||||| || || || ||| Sbjct 843 ATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 784 Query 1844 TTGGGACTTAAGTCTAAGTGTCCACATAGATAGTTATGTGGGCCTAGTGACCTAGCCCA 1902 |||| | | || || | ||| || ||||| |||||||||| ||| | |||||| Sbjct 783 TTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCCA 725 >seq77518 Length=14724 Score = 91.5 bits (100), Expect = 3e-15 Identities = 123/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1673 CCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGTTTCCCGTAT 1732 ||||||||||| || | ||| || |||||||||||||||||||||| ||| |||| Sbjct 2400 CCAGGATTGCAAAGTACGATACATGGAATCCCGCCTTTAATTTGAACTGATTTTTCGTAC 2341 Query 1733 TTAGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCT--TAAAG-TGTTTGAGG 1789 || | || || || |||| | ||| || || | ||||| | ||| | | ||| | Sbjct 2340 TTTGCATTTGACTGTCAGTTGCGTTGTGCTCCTACGAACTGTTGATAATGCTTTTTAATT 2281 Query 1790 AAAT--GC-GGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTT 1833 |||| || || ||| |||||||||||||| ||||| |||||||| Sbjct 2280 AAATAAGCTGGAGGGACATCATCAATGACGTTATACCACGCGTCGTT 2234 >seq1993 Length=81530 Score = 91.5 bits (100), Expect = 3e-15 Identities = 123/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 1673 CCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGTTTCCCGTAT 1732 ||||||||||| || | ||| || |||||| ||||||||||||||||||| ||||| Sbjct 74403 CCAGGATTGCAAAGCACGATACATGGAATCCCGTCTTTAATTTGAACTGGTTTGCCGTAC 74344 Query 1733 TTAGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCT--TAAAG-TGTTTGAGG 1789 || | || || ||||| | | ||| || | | ||||| | ||| | | ||| | Sbjct 74343 TTTGCATTTGACTGCCAATTGCGTTGTGCTCATACGAACTGTTGATAATGATTTTTAATT 74284 Query 1790 AAAT--GC-GGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTT 1833 |||| || || |||||||||||||||||| ||||| |||| ||| Sbjct 74283 AAATAAGCTGGAGGGACGTCATCAATGACGTTATACCACGCGTTGTT 74237 >seq22495 Length=567 Score = 87.8 bits (96), Expect = 3e-14 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 1670 GGACCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGTTTCCCG 1729 || ||||||||||| || | ||| | | ||||||| |||||||||||||||||| ||| Sbjct 370 GGTCCAGGATTGCAAAGTACGATACTTAGAATCCCGCATTTAATTTGAACTGGTTTTCCG 311 Query 1730 TATTTAGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCCTTAAAGTGTT----- 1784 || || | |||| ||||||| | || || || | ||||| | | | || | Sbjct 310 TACTTTGCATTGGCCTGCCAGTTGCGCTGTGCGCCTACGAACTGTTGACAATGCTTCTTA 251 Query 1785 -TGAGGAAATGCGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCGTTACTGTAGACC 1843 | | ||| ||| || |||||| |||||||| ||||| || || || ||| Sbjct 250 ATTAAATAATTCGGAGGGATGTCATCGATGACGTTATACCATGCATCATTTGAGTACGTT 191 Query 1844 TTGGGACTTAAGTCTAAGTGTCCACATAGATAGTTATGTGGGCCTAGTGA 1893 |||| | | || || || ||| || ||||| |||||||||| ||| Sbjct 190 TTGGAATTAAAATCCAAAAATCCTATTATGTAGTTGTGTGGGCCTAATGA 141 >seq35612 Length=1588 Score = 77.0 bits (84), Expect = 6e-11 Identities = 65/80 (81%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 1670 GGACCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGTTTCCCG 1729 || ||||||||||| || | ||| | || || ||||||||||||||||||||||| ||| Sbjct 1507 GGTCCAGGATTGCAAAGTACGATACTTGGAATGCCGCCTTTAATTTGAACTGGTTTTCCG 1566 Query 1730 TATTTAGTGTTGGATTGCCA 1749 || || | ||||| ||||| Sbjct 1567 TACTTTGCGTTGGCCTGCCA 1586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8644570348960