Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_033779.1 Length=2784 Score E Sequences producing significant alignments: (Bits) Value seq3283 105 1e-19 seq3439 102 1e-18 seq54129 78.8 2e-11 >seq3283 Length=49157 Score = 105 bits (116), Expect = 1e-19 Identities = 178/253 (70%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 1693 GGCCCTGGATTGCATAGAAAGATTGTGGGAATCCCGCCTTTAATTTGGATTGGTTTCCCG 1752 || || |||||||| || | ||| | |||||||||||||||||||| | |||||||||| Sbjct 2283 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAACTGGTTTCCCG 2224 Query 1753 TACTTTGTGTTGCTTTGCCAGTCTCGTTGGGCACCCATAAATTCCTTGA-AGTGCT---- 1807 ||||||| ||| ||||| | ||| || || || | || | |||| | |||| Sbjct 2223 TACTTTGCATTGGCCTGCCAATTTCGCTGTGCGCCTACGAACT-GTTGATAATGCTTCTT 2165 Query 1808 --TTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCGTTGCTGTAGAC 1865 ||| ||| | ||| ||||| || |||||||| ||||| ||||| || ||| Sbjct 2164 AATTAAATAATTCGGAGGGACGTCGTCGATGACGTTATACCATGCATCATTTGAGTA-CG 2106 Query 1866 CTTTGGGCTT-AGGTCAAGGTGTCCACATAAGTAGTTATGTGGGCCTAGAGAACGGGCCC 1924 ||||| || | || | ||| || |||||| |||||||||| ||||| |||| Sbjct 2105 TTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGGCCTAATGAACGAGCCC 2046 Query 1925 ATATGGTCTTCCC 1937 || || ||||| Sbjct 2045 ATGCTGTTTTCCC 2033 >seq3439 Length=62978 Score = 102 bits (112), Expect = 1e-18 Identities = 187/269 (70%), Gaps = 10/269 (4%) Strand=Plus/Minus Query 1677 TTTATATGAGGATGTTGGCCCTGGATTGCATAGAAAGATTGTGGGAATCCCGCCTTTAAT 1736 |||||| || || || || ||||||| || | ||| | ||||||||||||||||| Sbjct 979 TTTATAGGATAATTCAGGTCCAAGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAAT 920 Query 1737 TTGGATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCTCGTTGGGCACCCATAAATTC 1796 ||| | |||||| |||||||||| |||| ||||| | ||| || || || | || | Sbjct 919 TTGAACTGGTTTTCCGTACTTTGCGTTGGCATGCCAATTTCGCTGTGCGCCTACGAACT- 861 Query 1797 CTTGA-AGTGCT------TTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCACG 1849 |||| | |||| ||| ||| | ||| || ||||| |||||||| ||||| | Sbjct 860 GTTGATAATGCTTCTTAATTAAATAATTCGGAGGGACATCATCGATGACGTTATACCATG 801 Query 1850 CATCGTTGCTGTAGACCTTTGGGCTT-AGGTCAAGGTGTCCACATAAGTAGTTATGTGGG 1908 |||| || ||| ||||| || | || | ||| || |||||| |||||| Sbjct 800 CATCATTTGAGTA-CGTTTTGGAATTAAAATCCATAAATCCCATTATGTAGTTGTGTGGG 742 Query 1909 CCTAGAGAACGGGCCCATATGGTCTTCCC 1937 |||| ||||| |||||| || ||||| Sbjct 741 CCTAATGAACGAGCCCATGCTGTTTTCCC 713 >seq54129 Length=2260 Score = 78.8 bits (86), Expect = 2e-11 Identities = 119/170 (70%), Gaps = 6/170 (4%) Strand=Plus/Minus Query 1693 GGCCCTGGATTGCATAGAAAGATTGTGGGAATCCCGCCTTTAATTTGGATTGGTTTCCCG 1752 || || |||||||| || | ||| | |||||||||||||||||||| |||||||| ||| Sbjct 2260 GGTCCAGGATTGCAAAGTACGATACTTGGAATCCCGCCTTTAATTTGAATTGGTTTTCCG 2201 Query 1753 TACTTTGTGTTGCTTTGCCAGTCTCGTTGGGCACCCATAAATTCCTTGAAGTGCT----- 1807 ||||||| ||| || |||| | || || || | || | | | | |||| Sbjct 2200 TACTTTGCATTGGCCTGTCAGTTGTGCTGTGCGCCTACGAACTGTTGGTAATGCTTCTTA 2141 Query 1808 -TTAGATAGTGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCGTT 1856 ||| ||| | ||| || || || |||||||| ||||| |||| || Sbjct 2140 ATTAAATAATTCGGAGGGACATCGTCGATGACGTTATACCATACATCATT 2091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8788187314275