Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_003287.2 Length=6407 Score E Sequences producing significant alignments: (Bits) Value seq12 331 4e-87 seq1048 87.8 7e-14 >seq12 Length=102570143 Score = 331 bits (366), Expect = 4e-87 Identities = 183/183 (100%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 5733 CCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTC 5792 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76323545 CCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTC 76323486 Query 5793 TTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGGCTATTCTTTTGATTTATAAGGG 5852 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76323485 TTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGGCTATTCTTTTGATTTATAAGGG 76323426 Query 5853 ATTTTGCCGATTTCGGCCTATTGGTTAAAAAATGAGCTGATTTAACAAAAATTTAACGCG 5912 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76323425 ATTTTGCCGATTTCGGCCTATTGGTTAAAAAATGAGCTGATTTAACAAAAATTTAACGCG 76323366 Query 5913 AAT 5915 ||| Sbjct 76323365 AAT 76323363 >seq1048 Length=57493 Score = 87.8 bits (96), Expect = 7e-14 Identities = 50/51 (98%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 5605 CCACGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTTAG 5655 |||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 12890 CCACGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTAAG 12940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20385101851312