Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gossypium_20hirsutum_20[refseq_20GCF_5F000987745.1_202015-05-05] 9,148 sequences; 2,189,140,010 total letters Query= NC_025824.1 Length=6408 Score E Sequences producing significant alignments: (Bits) Value seq12 297 8e-77 seq1048 78.8 4e-11 >seq12 Length=102570143 Score = 297 bits (328), Expect = 8e-77 Identities = 190/207 (92%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 5734 CCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTC 5793 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76323545 CCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTC 76323486 Query 5794 TTGTTCCAAACTGGAACAACACTCACAACTAACTCGGCCTATTCTTTTGATTTATAAGGA 5853 ||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||| Sbjct 76323485 TTGTTCCAAACTGGAACAACACTCAACCCTATCTCGGGCTATTCTTTTGATTTATAAGGG 76323426 Query 5854 TTTTTGTCATTTTCTGCTTACTGGTTAAAAAATAAGCTGATTTAACAAATATTTAACGCG 5913 ||||| | |||| || || |||||||||||| ||||||||||||||| |||||||||| Sbjct 76323425 ATTTTGCCGATTTCGGCCTATTGGTTAAAAAATGAGCTGATTTAACAAAAATTTAACGCG 76323366 Query 5914 AAATTTAACAAAACATTAACGTTTACA 5940 || |||||||||| ||||||||||||| Sbjct 76323365 AATTTTAACAAAATATTAACGTTTACA 76323339 >seq1048 Length=57493 Score = 78.8 bits (86), Expect = 4e-11 Identities = 48/51 (94%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 5606 CCACGTTCTCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGATCCCTTTAG 5656 |||||||| |||||||||||||||||||||||||||||||| |||||| || Sbjct 12890 CCACGTTCGCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGCTCCCTTAAG 12940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20388301521984