Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_000869.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq16 123 4e-25 seq13 100 5e-18 >seq16 Length=188620566 Score = 123 bits (136), Expect = 4e-25 Identities = 181/256 (71%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 1861 CTTTAATTTGAACTGGTTTGCCGTATTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCA 1920 |||| || ||||| ||||| | ||| ||| || ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1921 TGAACTCTTTAAAGTGTTTTAGATAATGCGGATCGACGTCATCGATGACGTTGAACCACG 1980 || || || ||||||||| | | || || | |||| ||| || ||||| | | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1981 CATCATTATTATACACTTTTGGACTTAAATCTAAATGGCCACACAGATAATTATGTGGTC 2040 |||| ||| | || | ||| | || ||||||| |||| | |||||||||| || Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 2041 CCAATGACCTAGCCCACATCGTCTTCCCTGTTCTGCTATCACCCTCAATGACTATAGTTA 2100 ||||||| || |||||||| ||||| || ||||| |||||| ||||| | ||| | Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACT 2249094 Query 2101 TTGGTCTCAATGGCCG 2116 ||||||||||| || Sbjct 2249093 GAGGTCTCAATGGGCG 2249078 >seq13 Length=197258317 Score = 100 bits (110), Expect = 5e-18 Identities = 204/298 (68%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 1826 TCCAGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGTTTGCCGTA 1885 ||| || ||||| || | ||| || || || || ||||| | || ||| ||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1886 TTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGTTTTAGATA 1945 |||| ||| ||||| | ||| || || || |||||||| |||| || | || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1946 ATGCGGATCGACGTCATCGATGACGTTG-AACCACGCATCATTATTATACAC-TTTTGGA 2003 || || | ||||||||||| |||| || || | || || | || |||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCA-ACGTCGTTTGAGAAGACTTTTTCTT 89851378 Query 2004 CTT-AAATCTAAATGGCCACACAGATAATTATGTGGTCCCAATGACCTAGCCCACATCGT 2062 ||| | || | ||| ||||| | || |||||| |||||| || || |||||||| || Sbjct 89851379 CTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGT 89851438 Query 2063 CTTCCCTGTTCTGCTATCACCCTCAATGACTATAGTTATTGGTCTCAATGGCCGCGCA 2120 || ||||| ||| ||||| || |||| ||| | ||||||||| ||||||||| Sbjct 89851439 TTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCA 89851496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694258846416