Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_000882.1
Length=2744
Score E
Sequences producing significant alignments: (Bits) Value
seq13 120 5e-24
seq16 116 6e-23
seq11 111 3e-21
>seq13
Length=197258317
Score = 120 bits (132), Expect = 5e-24
Identities = 241/350 (69%), Gaps = 13/350 (4%)
Strand=Plus/Plus
Query 1691 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1750
|||||| ||||| || | ||| || || || || ||||| | || |||||| ||||
Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259
Query 1751 CTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAAGTA 1810
|| ||| ||||| | | ||| || || || || ||||| | ||||| |||||
Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319
Query 1811 ATGCGGATCGACGTCATCAATGACGTTATACCAAGGGTCGTTGTTGTACACTTTTGGG-C 1869
|| || | |||||| |||| ||| || | |||||| | | |||||| |
Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379
Query 1870 TTAAG-TCTAAATGACCACATAAATAGTTATGTGGTCCTAACGACCTGGCCCACATTGTT 1928
|| || || | ||||||||||| ||||||||| ||| || || || ||||||||||||
Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439
Query 1929 TTCCCCGTCCTGCTATCACCCTCTACCACTAT--ACTTATCGGTCTTAATGGCCGCGCA- 1985
|| || |||||| ||||| |||| | ||| ||| | ||||| | |||||||||
Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCAG 89851497
Query 1986 -GGCTTG----ACAACGTTTGCAGCAACCCATTCATTTAAGTTCCTCTGG 2030
|||||| ||| || || | | |||||| ||| || || |||||
Sbjct 89851498 CGGCTTGTAGTCCAAAGTATGAATCTGCCCATT-ATTGCAGGTCTTCTGG 89851546
>seq16
Length=188620566
Score = 116 bits (128), Expect = 6e-23
Identities = 184/260 (71%), Gaps = 8/260 (3%)
Strand=Plus/Minus
Query 1726 CTTTAATTTGAACTGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCA 1785
|||| || ||||| || |||| |||||| || ||||||||||||||| || || |
Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274
Query 1786 TGAATTCTTTAAAATGCTTTAAGTAATGCGGATCGACGTCATCAATGACGTTATA--CCA 1843
||||| || | || ||||| | || || | |||| |||||| |||||||| |||
Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214
Query 1844 AGGGTCGTTGTTGTACACTTTTGGGCTTAAGTCTAAATGACCACATAAATAGTTATGTGG 1903
||||| | | || | || | |||||||||| ||||| |||||| ||||||
Sbjct 2249213 CA--TCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156
Query 1904 TCCTAACGACCTGGCCCACATTGTTTTCCCCGTCCTGCTATCACCCTCTACCACTAT--A 1961
||| || || || ||||||||||| || || || || |||||| || | | ||| |
Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096
Query 1962 CTTATCGGTCTTAATGGCCG 1981
|| | ||||| ||||| ||
Sbjct 2249095 CTGA--GGTCTCAATGGGCG 2249078
>seq11
Length=168460249
Score = 111 bits (122), Expect = 3e-21
Identities = 236/348 (68%), Gaps = 11/348 (3%)
Strand=Plus/Minus
Query 1691 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1750
|||||| ||||| || | ||| || || || || ||||| | || |||||| |||||
Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545
Query 1751 CTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAAGTA 1810
|| || ||||| | || ||| || || || || ||||| | ||| | |||||
Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485
Query 1811 ATGCGGATCGACGTCATCAATGACGTTATACCAAGGGTCGTTGTTGTACACTTTTGGGCT 1870
|| || | |||||| |||| ||| || || || ||| | | |||||| | |
Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425
Query 1871 TAAGTCTAAATGACCACATAAATAGTTATGTGGTCCTAACGACCTGGCCCACATTGTTTT 1930
||| | ||||||||||| ||||||||| ||| || || || ||||||||||||||
Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365
Query 1931 CCCCGTCCTGCTATCACCCTCTACCACTAT--ACTTATCGGTCTTAATGGCCGCGCA--G 1986
| |||||| || ||| | || | | | ||| | ||||| | ||||||||| |
Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCAGCG 165527307
Query 1987 GCTTG----ACAACGTTTGCAGCAACCCATTCATTTAAGTTCCTCTGG 2030
||||| ||| || || | | ||||||| || || || |||||
Sbjct 165527306 GCTTGTAGACCAAAGTATGAATCTGCCCATTC-TTGCAGGTCTTCTGG 165527260
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8671859210080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |