Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_000882.1 Length=2744 Score E Sequences producing significant alignments: (Bits) Value seq13 120 5e-24 seq16 116 6e-23 seq11 111 3e-21 >seq13 Length=197258317 Score = 120 bits (132), Expect = 5e-24 Identities = 241/350 (69%), Gaps = 13/350 (4%) Strand=Plus/Plus Query 1691 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1750 |||||| ||||| || | ||| || || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1751 CTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAAGTA 1810 || ||| ||||| | | ||| || || || || ||||| | ||||| ||||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1811 ATGCGGATCGACGTCATCAATGACGTTATACCAAGGGTCGTTGTTGTACACTTTTGGG-C 1869 || || | |||||| |||| ||| || | |||||| | | |||||| | Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1870 TTAAG-TCTAAATGACCACATAAATAGTTATGTGGTCCTAACGACCTGGCCCACATTGTT 1928 || || || | ||||||||||| ||||||||| ||| || || || |||||||||||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1929 TTCCCCGTCCTGCTATCACCCTCTACCACTAT--ACTTATCGGTCTTAATGGCCGCGCA- 1985 || || |||||| ||||| |||| | ||| ||| | ||||| | ||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCGCGCAG 89851497 Query 1986 -GGCTTG----ACAACGTTTGCAGCAACCCATTCATTTAAGTTCCTCTGG 2030 |||||| ||| || || | | |||||| ||| || || ||||| Sbjct 89851498 CGGCTTGTAGTCCAAAGTATGAATCTGCCCATT-ATTGCAGGTCTTCTGG 89851546 >seq16 Length=188620566 Score = 116 bits (128), Expect = 6e-23 Identities = 184/260 (71%), Gaps = 8/260 (3%) Strand=Plus/Minus Query 1726 CTTTAATTTGAACTGGCTTTCCGTACTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCA 1785 |||| || ||||| || |||| |||||| || ||||||||||||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1786 TGAATTCTTTAAAATGCTTTAAGTAATGCGGATCGACGTCATCAATGACGTTATA--CCA 1843 ||||| || | || ||||| | || || | |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1844 AGGGTCGTTGTTGTACACTTTTGGGCTTAAGTCTAAATGACCACATAAATAGTTATGTGG 1903 ||||| | | || | || | |||||||||| ||||| |||||| |||||| Sbjct 2249213 CA--TCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1904 TCCTAACGACCTGGCCCACATTGTTTTCCCCGTCCTGCTATCACCCTCTACCACTAT--A 1961 ||| || || || ||||||||||| || || || || |||||| || | | ||| | Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 1962 CTTATCGGTCTTAATGGCCG 1981 || | ||||| ||||| || Sbjct 2249095 CTGA--GGTCTCAATGGGCG 2249078 >seq11 Length=168460249 Score = 111 bits (122), Expect = 3e-21 Identities = 236/348 (68%), Gaps = 11/348 (3%) Strand=Plus/Minus Query 1691 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1750 |||||| ||||| || | ||| || || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1751 CTTTGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAAGTA 1810 || || ||||| | || ||| || || || || ||||| | ||| | ||||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1811 ATGCGGATCGACGTCATCAATGACGTTATACCAAGGGTCGTTGTTGTACACTTTTGGGCT 1870 || || | |||||| |||| ||| || || || ||| | | |||||| | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1871 TAAGTCTAAATGACCACATAAATAGTTATGTGGTCCTAACGACCTGGCCCACATTGTTTT 1930 ||| | ||||||||||| ||||||||| ||| || || || |||||||||||||| Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Query 1931 CCCCGTCCTGCTATCACCCTCTACCACTAT--ACTTATCGGTCTTAATGGCCGCGCA--G 1986 | |||||| || ||| | || | | | ||| | ||||| | ||||||||| | Sbjct 165527364 GCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCGGCCGCGCAGCG 165527307 Query 1987 GCTTG----ACAACGTTTGCAGCAACCCATTCATTTAAGTTCCTCTGG 2030 ||||| ||| || || | | ||||||| || || || ||||| Sbjct 165527306 GCTTGTAGACCAAAGTATGAATCTGCCCATTC-TTGCAGGTCTTCTGG 165527260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8671859210080