Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_001359.1 Length=2631 Score E Sequences producing significant alignments: (Bits) Value seq11 183 5e-43 seq13 170 3e-39 >seq11 Length=168460249 Score = 183 bits (202), Expect = 5e-43 Identities = 220/299 (74%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 1597 CCCGGATTGCAAAGAAAGATAGTGGGTATCCCACCTTTAATTTGAATTGGTTTGCCGTAT 1656 || || ||||| || | ||| || ||||| || ||||| | || |||| ||||||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1657 TTGCAGTTTGATTGCCAATCCCGTTGGGCCCCCATAAACTCTTTAAAGTGCTTAACATAA 1716 ||||||| || ||||||| ||||| || || ||||||||||| ||||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1717 TGCGGAGGGATGTCATCAATGACGTTATACCATGCATTATTGGAGTAGATTTTTGGGCTG 1776 || || || |||||||| |||| ||| || || || || ||| ||| |||| | || Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1777 AGATCCATATGACCACATATGTAATTGTGTGGGCCGAGACTTCGGGCCCATAATGTTTTG 1836 | |||||||||||||||||||| || ||| || | | || ||||| | ||||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1837 CCTGTCCGTGAAGGACCCTCGACCACTAATGACAATGGTCTCATTGGCCGCGCAGCGGC 1895 | ||||| ||| ||| | | | | |||| ||||||||| |||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGGC 165527305 >seq13 Length=197258317 Score = 170 bits (188), Expect = 3e-39 Identities = 220/301 (73%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1597 CCCGGATTGCAAAGAAAGATAGTGGGTATCCCACCTTTAATTTGAATTGGTTTGCCGTAT 1656 || || ||||| || | ||| || ||||| || ||||| | || |||| ||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1657 TTGCAGTTTGATTGCCAATCCCGTTGGGCCCCCATAAACTCTTTAAAGTGCTTAACATAA 1716 |||||||| || ||||||| |||| || || ||||||||||| ||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1717 TGCGGAGGGATGTCATCAATGACGTTATACCATGCATTATTGGAGTAGA-TTTTTGGGC- 1774 || || || |||||||| |||| ||| || | | || ||| ||| ||||| | Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1775 TGAGATCCATATGACCACATATGTAATTGTGTGGGCCGAGACTTCGGGCCCATAATGTTT 1834 |||| |||||||||||||||| ||| || ||| || | | || ||||| | ||||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1835 TGCCTGTCCGTGAAGGACCCTCGACCACTAATGACAATGGTCTCATTGGCCGCGCAGCGG 1894 | ||||||| ||| || || | | || |||| ||||||||| ||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Query 1895 C 1895 | Sbjct 89851501 C 89851501 Score = 91.5 bits (100), Expect = 2e-15 Identities = 136/192 (71%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 1704 GTGCTTAACATAATGCGGAGGGATGTCATCAATGACGTTATACCATGCATTATTGGAGTA 1763 |||||| | || || || || |||||||| |||| ||| || || || || ||| | Sbjct 172133881 GTGCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 172133940 Query 1764 GATTTTTGGGCTGAGATCCATATGACCACATATGTAATTGTGTGGGCCGAGACTTCGGGC 1823 || |||| | |||| |||| || ||||||||||| || ||| || | || || Sbjct 172133941 GACTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGC 172133999 Query 1824 CCATAATGTTTTGCCTGTCCGTGAAGGACCCTCGACCACTAATGACAATGGTCTCATTGG 1883 ||| | |||||||||||| | ||| ||| || | | || |||| |||||||| || Sbjct 172134000 CCACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGATTACTGACTTTGGTCTCACCGG 172134059 Query 1884 CCGCGCAGCGGC 1895 ||| |||||||| Sbjct 172134060 CCGTGCAGCGGC 172134071 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8310265080656