Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_001412.1 Length=2994 Score E Sequences producing significant alignments: (Bits) Value seq13 107 4e-20 seq16 100 5e-18 >seq13 Length=197258317 Score = 107 bits (118), Expect = 4e-20 Identities = 243/365 (67%), Gaps = 8/365 (2%) Strand=Plus/Plus Query 2067 TCCTGGATTGCATAATATAATGCAGGGGATACCACCTTTAATGACACGTGGTTTTCCATA 2126 |||||| ||||||| ||| || || || || ||||| | | || ||| || | || Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 2127 CTTTAAGTTTGTCTGCCACTCCTTTTGTGCTCCAATAAGGTGTTTCCAGTGTTTCATCTT 2186 || |||| | |||||| | | ||| |||||||||| | ||||||||| ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTG------CTT 89851313 Query 2187 TAAGTAAGTGGGATCTACGTCATCAATGACGTTGTATTCCACTTCATC--ATAATACGTT 2244 ||||| || || |||||| |||| |||||| || || || | | || || || Sbjct 89851314 GAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTT 89851373 Query 2245 CTAGGGCTAAAATCTAAGTGCCCTGTGATGTAATTGTGGGCCCCTAAAGATCTAGCCCAC 2304 | | | || | || || | ||| || || || |||||||| |||||| Sbjct 89851374 TTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCAC 89851433 Query 2305 ATAGTCTTCCCTGTTCTTGAATCACCCTCTACTATGATACTATTATATCTTAAAGGCCGC 2364 || || || ||||| || ||||||| |||| || || || ||| | |||||| Sbjct 89851434 ATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGC 89851493 Query 2365 GCAGCGGCATCAACCCCGAAATATGCATCAGCCCATTCTTGCATTTCCTCAGGAACGTTT 2424 |||||||| | | || || |||| ||| ||||||| ||||| || || || || || Sbjct 89851494 GCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATTA 89851553 Query 2425 GTGAA 2429 ||||| Sbjct 89851554 GTGAA 89851558 >seq16 Length=188620566 Score = 100 bits (110), Expect = 5e-18 Identities = 216/322 (67%), Gaps = 6/322 (2%) Strand=Plus/Minus Query 2116 GGTTTTCCATACTTTAAGTTTGTCTGCCACTCCTTTTGTGCTCCAATAAGGTGTTTCCAG 2175 ||||||| ||||| | |||| ||||| || ||||||| |||| | | |||||| Sbjct 2249319 GGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAAGTAATTCCTTCCAG 2249260 Query 2176 TGTTTCATCTTTAAGTAAGTGGGATCTACGTCATCAATGACGTTGTATTCCACTTCATCA 2235 ||||| | || ||||| | |||| |||||| ||||| |||||||| || | | Sbjct 2249259 TGTTTTA-----AACATTGTGGGTTA-ACGTTATCAATAACGTTATATTCCACATCGTTA 2249206 Query 2236 TAATACGTTCTAGGGCTAAAATCTAAGTGCCCTGTGATGTAATTGTGGGCCCCTAAAGAT 2295 | | |||| | || ||||| | || | | ||||| || || || ||| Sbjct 2249205 GAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTCCCAATGAT 2249146 Query 2296 CTAGCCCACATAGTCTTCCCTGTTCTTGAATCACCCTCTACTATGATACTATTATATCTT 2355 || |||||||| ||||| || |||||||||||||| || | ||| || | | ||| Sbjct 2249145 CTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGACTGAGGTCTC 2249086 Query 2356 AAAGGCCGCGCAGCGGCATCAACCCCGAAATATGCATCAGCCCATTCTTGCATTTCCTCA 2415 || || || | |||| || ||||| |||| ||||||| |||||| | | Sbjct 2249085 AATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCATTTTTGCATAACTTGT 2249026 Query 2416 GGAACGTTTGTGAATGAGGACA 2437 || ||||| ||||| || |||| Sbjct 2249025 GGTACGTTCGTGAAAGAAGACA 2249004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9468641752680