Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_001439.1 Length=2647 Score E Sequences producing significant alignments: (Bits) Value seq16 161 2e-36 seq13 122 1e-24 seq11 107 3e-20 >seq16 Length=188620566 Score = 161 bits (178), Expect = 2e-36 Identities = 345/508 (68%), Gaps = 18/508 (4%) Strand=Plus/Minus Query 1762 CTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGATTGCCAGTCCTTTTGTGCCCCAA 1821 |||| || |||||||| |||| || || || || | ||||||||| ||||||| |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1822 TTAGCTCTTTCCAGTGCTTTAACTTCAAATAATTGGGGCTTATGTCATCAATGACGTTGT 1881 || || |||||||| ||||| | | | ||| | | || |||||| ||||| | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1882 ATTCCACTGAGTTGGAATAGACACGT-GAATTAAAGTCCAAATGACCGCTCAAATAATTA 1940 ||||||| ||| || | || ||| | ||| ||||| |||| ||| || ||||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAAC-CGTAGGATTCAAGTCTAAATAACCACTTAAATAATTA 2249161 Query 1941 TGTGGGCCTAATGCACGAGCCCACATTGTCTTTCCAGTTCGTGAATCACCTTCGACGATG 2000 ||| || |||| | ||||||||||||||||| |||| |||||||||||| | || Sbjct 2249160 TGTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATT 2249101 Query 2001 AT--ACTAATAGGTCTTTCTGGCCGCGCAGCGGAACCCCTTCCGAAATAGTCGTCAACCC 2058 || ||| |||||| ||| || | |||| | | ||||| || || ||| Sbjct 2249100 ATTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCC 2249043 Query 2059 AGTCTTGCATAACAACCGGAATATTGACGAATGATGACAACGGAAATGGAGGAACCCATG 2118 | | ||||||||| || | || ||| || |||| | ||||| ||||||| Sbjct 2249042 ATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGACACGGCGTATGGACTTACCCATG 2248983 Query 2119 GTTCCGGCACT--TTGAAGAAGATCCGT-TCGAGATTAGAACGGATGTTGTGATTTTGAA 2175 | || | || ||||| || |||| || || | | | | || || | || Sbjct 2248982 GAGCCTGTGCTGGTTGAAAAA---CCGTATCCAGTTGTGCATCAAGCTTTTGGAAATTAA 2248926 Query 2176 GGACGTAATCTTTCGGTTGTTCTTCCTTCAATATTGTCAAGGCAGATTCAATTGAATCTG 2235 || | | | ||| || || |||||||||| ||| || || || | ||||||| | Sbjct 2248925 AGAGGAAGTATTTTGGCTGCTCTTCCTTCATGATTTGTAATGCTGACTGTTTTGAATCGG 2248866 Query 2236 CGTTTAATGCCTTTGCGTATGAGTCGTT 2263 ||||| ||||||| |||||| ||||| Sbjct 2248865 AGTTTATAGCCTTTGTGTATGACTCGTT 2248838 >seq13 Length=197258317 Score = 122 bits (134), Expect = 1e-24 Identities = 219/316 (69%), Gaps = 12/316 (4%) Strand=Plus/Plus Query 1720 AACCCTCACCTGGATTGCACAGCACGATTGATGGTATTCCTCCTTTAATTTGAACCGGCT 1779 |||| | ||||| ||||| || | ||||| |||||| |||||||| | || |||| Sbjct 89851193 AACCAACTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCT 89851252 Query 1780 TTCCATATTTACAGTTGGATTGCCAGTCCTTTTGTGCCCCAATTAGCTCTTTCCAGTGCT 1839 | | ||||| ||||| || ||||| | | ||| || ||||| | |||||||||||||| Sbjct 89851253 TGTCGTATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCT 89851312 Query 1840 TTAACTTCAAATAATTGGGGCTTATGTCATCAATGACGTTGTATTCCACTGAGTTGGAAT 1899 | || | || | | || ||||||||| |||| |||||| || || ||| || Sbjct 89851313 TGAAGT----ATTGTGGTGG--TATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGA 89851366 Query 1900 AGACACGT--GAATTAAAGTCCAAATGACCGCTCAAATAATTATGTGGGCCTAATGCACG 1957 |||| | || | ||||| |||||| | | || |||||| || || | | Sbjct 89851367 AGACTTTTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCT 89851426 Query 1958 AGCCCACATTGTCTTTCCAGTTCGTGAATCACCTTCGACGATGAT--ACTAATAGGTCTT 2015 ||||||||||| || || || | ||||||| ||| | ||| || ||| | ||||| Sbjct 89851427 TGCCCACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTC 89851484 Query 2016 TCTGGCCGCGCAGCGG 2031 ||||||||||||| Sbjct 89851485 ATCGGCCGCGCAGCGG 89851500 >seq11 Length=168460249 Score = 107 bits (118), Expect = 3e-20 Identities = 214/314 (68%), Gaps = 10/314 (3%) Strand=Plus/Minus Query 1720 AACCCTCACCTGGATTGCACAGCACGATTGATGGTATTCCTCCTTTAATTTGAACCGGCT 1779 ||||| | ||||| ||||| |||| ||||| |||||| |||||||| | || |||| Sbjct 165527611 AACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCT 165527552 Query 1780 TTCCATATTTACAGTTGGATTGCCAGTCCTTTTGTGCCCCAATTAGCTCTTTCCAGTGCT 1839 | || ||||| |||| || ||||| | ||| || ||||| | ||||||||||||| Sbjct 165527551 TGCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCA 165527492 Query 1840 TTAACTTCAAATAATTGGGGCTTATGTCATCAATGACGTTGTATTCCACTGAGTTGGAAT 1899 | || | || | | || ||||||||| |||| |||||| || | ||| || Sbjct 165527491 TGAAGT----ATTGTGGTGG--TATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGA 165527438 Query 1900 AGACACGTGAATTAAAGTCCAAATGACCGCTCAAATAATTATGTGGGCCTAATGCACGAG 1959 |||| | || ||||| |||||| | | || |||||| || || | | | Sbjct 165527437 AGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTG 165527378 Query 1960 CCCACATTGTCTTTCCAGTTCGTGAATCACCTTCGACGATGAT--ACTAATAGGTCTTTC 2017 |||||||||| || | || | |||| ||||| | ||| | ||| | ||||| Sbjct 165527377 CCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCAT 165527320 Query 2018 TGGCCGCGCAGCGG 2031 ||||||||||||| Sbjct 165527319 CGGCCGCGCAGCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8361464249424