Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_001467.1 Length=2779 Score E Sequences producing significant alignments: (Bits) Value seq13 104 4e-19 seq11 104 4e-19 >seq13 Length=197258317 Score = 104 bits (114), Expect = 4e-19 Identities = 204/301 (68%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1842 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACGGGTTTCCCGTA 1901 |||||| ||||| || | ||| || || || || ||||| | || || || |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1902 TTTCGTGTTGGACTGCCAGTCCCTCTGGGACCCCATGAATTCCTTAAAGTGCTTTAGGTA 1961 ||| ||| |||||||| | || | || || || || || ||||||| | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1962 GTGGGGATCGACGTCATCAATGACGTTGTACCAGGCAGCATTATTGAAGACCTTTGGAC- 2020 || || | |||||| |||| |||||| | | || |||||| ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 2021 -TAAGGTCCAGGTGTCCACACAGGTAATTATGTGGGCCTAAAGATCTGGCCCATATCGTC 2079 | ||||||| || ||||| | ||| |||||| || |||||||| ||||| || || Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 2080 TTCCCTGTTCTGCTATCACCTTCTATGACAATACTATTAGGTCTCCATGGCCGCGCAGCG 2139 || ||||| ||| ||||| |||||||| || || |||||| |||||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCG 89851499 Query 2140 G 2140 | Sbjct 89851500 G 89851500 Score = 84.2 bits (92), Expect = 4e-13 Identities = 139/196 (71%), Gaps = 11/196 (6%) Strand=Plus/Plus Query 1950 GTGCTTTAGGTAGTGGGGATCGACGTCATCAATGACGTTGTACCAGGCAGCATTATT--- 2006 |||||| | ||| || || | |||||| |||| |||||| | |||| || || Sbjct 172133881 GTGCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTA---GTCAGCGTTGTTTGA 172133937 Query 2007 GAAGACCTTTGGACTAAGGTCCAGGTGTCCACACAGGTAATTATGTGGGCCTAAAGATCT 2066 |||||| ||| | ||||||| || ||||| | ||| |||||| || | ||||| Sbjct 172133938 GAAGACTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCT 172133996 Query 2067 GGCCCATATCGTCTTCCCTGTTCTGCTATCACCTTCTATGACAATACT--ATTAGGTCTC 2124 ||||| || || || ||||||||| || |||||||||| | |||| || |||||| Sbjct 172133997 TGCCCACATTGTTTTGCCTGTTCTGGAATTACCTTCTATG--ATTACTGACTTTGGTCTC 172134054 Query 2125 CATGGCCGCGCAGCGG 2140 ||||| ||||||| Sbjct 172134055 ACCGGCCGTGCAGCGG 172134070 >seq11 Length=168460249 Score = 104 bits (114), Expect = 4e-19 Identities = 205/302 (68%), Gaps = 6/302 (2%) Strand=Plus/Minus Query 1842 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAACGGGTTTCCCGTA 1901 |||||| ||||| || | ||| || || || || ||||| | || || || ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1902 TTTCGTGTTGGACTGCCAGTCCCTCTGGGACCCCATGAATTCCTTAAAGTGCTTTAGGTA 1961 ||| || |||||||| | | || | || || || || || ||||| | | ||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1962 GTGGGGATCGACGTCATCAATGACGTTGTACCAGGCAGCATTATT---GAAGACCTTTGG 2018 || || | |||||| |||| |||||| | |||| || || |||||| ||| Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTA---GTCAGCGTTGTTTGAGAAGACTTTTTT 165527428 Query 2019 ACTAAGGTCCAGGTGTCCACACAGGTAATTATGTGGGCCTAAAGATCTGGCCCATATCGT 2078 | |||||| || ||||| | ||| |||||| || |||||||| ||||| || || Sbjct 165527427 GTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGT 165527368 Query 2079 CTTCCCTGTTCTGCTATCACCTTCTATGACAATACTATTAGGTCTCCATGGCCGCGCAGC 2138 || | ||| ||| || ||||| ||||| | || |||||| ||||||||||| Sbjct 165527367 TTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGC 165527308 Query 2139 GG 2140 || Sbjct 165527307 GG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8780653250880