Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_001507.1 Length=2588 Score E Sequences producing significant alignments: (Bits) Value seq11 140 5e-30 seq13 132 8e-28 seq16 123 4e-25 >seq11 Length=168460249 Score = 140 bits (154), Expect = 5e-30 Identities = 342/512 (67%), Gaps = 16/512 (3%) Strand=Plus/Minus Query 1666 ACCCTCTCCAGGATTGCACAGCACGATTGACGGGATACCTCCTTTAATTTGAACTGGCTT 1725 |||| |||| || ||||| |||| ||||| || || |||||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1726 TCCGTATTTACAGTTAGTCTGCCAATCTCTTTGGGCCCCAATGAGTTCTTTCCAATGTTT 1785 |||||||| |||| || |||||||| || ||| || ||||| | |||||||| || | Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCAT 165527491 Query 1786 CAACTTTAGATATTGCGGTGTGACATCATCGATGACGTTATACTCAACCTTGTTTGAGTA 1845 || | |||| |||| | |||||||||| ||| || ||| | ||||||||| | Sbjct 165527490 GAAGT------ATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437 Query 1846 AACCCTAGAATTGAGATCCAAATGCCCGCTCAAATAATTATGTGGGCCTAGTGAACGAGC 1905 || | ||| | |||| ||| || | | || |||||| || | || | || Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377 Query 1906 CCACATAGTCTTTCCCGTCCGACTATCGCCCTCGATGATAAT--ACTAATAGGTCTCTCC 1963 |||||| || || | |||| || || | ||||| | ||| | |||||| | Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATC 165527319 Query 1964 GGCCGCGCAGCGGAACTCTT--TCCAAAATAATTTTCAGCCCATTGTCTCATCTCGTCTG 2021 ||||||||||||| || | ||||| || || ||||||| | || || |||| Sbjct 165527318 GGCCGCGCAGCGG--CTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTG 165527261 Query 2022 GCACGTTAGTAAATGATGAGACGTGGAACGGAGGAAGCCATGGTTCAGGAGTCTTATCAA 2081 | || ||||| || ||| | |||| ||| | |||||| | | || | ||| Sbjct 165527260 GTACATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGAGCTGTAGGGATTTCAT 165527201 Query 2082 ATATCCTATCTAAATTGCTATTTAGATTGTGGAACTGAAATAAATATTTTTCTGGGATTT 2141 | | ||||| | ||| || | ||||| ||| || | | | | |||||| | | Sbjct 165527200 AGACTCTATCCAGGTTGTAGTTGATGTTGTGATGCTGTAACAGA-AAGTCTCTGGGTTGT 165527142 Query 2142 TC-TCTCTAATTATCTGCAGGGCTTCTTCTTT 2172 || |||||||| | ||||| ||||| ||||| Sbjct 165527141 TCATCTCTAATAACCTGCAATGCTTCATCTTT 165527110 >seq13 Length=197258317 Score = 132 bits (146), Expect = 8e-28 Identities = 254/370 (69%), Gaps = 16/370 (4%) Strand=Plus/Plus Query 1671 CTCCAGGATTGCACAGCACGATTGACGGGATACCTCCTTTAATTTGAACTGGCTTTCCGT 1730 |||| || ||||| || | ||||| || || |||||||| | || |||||| ||| Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1731 ATTTACAGTTAGTCTGCCAATCTCTTTGGGCCCCAATGAGTTCTTTCCAATGTTTCAACT 1790 |||| ||||||| |||||||| | ||| || ||||| | |||||||| || || || | Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGT 89851318 Query 1791 TTAGATATTGCGGTGTGACATCATCGATGACGTTATACTCAACCTTGTTTGAGTAAACCC 1850 |||| |||| | |||||||||| ||| || ||||| | ||||||| | || Sbjct 89851319 ------ATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1851 TAGAAT--TGAGATCCAAATGCCCGCTCAAATAATTATGTGGGCCTAGTGAACGAGCCCA 1908 | | |||| |||| ||| || | | || |||||| || | || | ||||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1909 CATAGTCTTTCCCGTCCGACTATCGCCCTCGATGATAAT--ACTAATAGGTCTCTCCGGC 1966 ||| || || || |||| ||| | || ||||| || ||| | |||||| |||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1967 CGCGCAGCGGAACTCTT--TCCAAAATAATTTTCAGCCCATTGTCTCATCTCGTCTGGCA 2024 |||||||||| || | |||||| || || ||||||| | || || ||||| | Sbjct 89851491 CGCGCAGCGG--CTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTA 89851548 Query 2025 CGTTAGTAAA 2034 | ||||| || Sbjct 89851549 CATTAGTGAA 89851558 >seq16 Length=188620566 Score = 123 bits (136), Expect = 4e-25 Identities = 235/343 (69%), Gaps = 16/343 (5%) Strand=Plus/Minus Query 1707 CTTTAATTTGAACTGGCTTTCCGTATTTACAGTTAGTCTGCCAATCTCTTTGGGCCCCAA 1766 |||| || ||||| || |||| ||| || || || | ||||| |||||||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1767 TGAGTTCTTTCCAATGTTTCAACTTTAGATATTGCGGTGTGACATCATCGATGACGTTAT 1826 | ||| ||||| ||||| || | |||| || | || | ||| || ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1827 ACTCAACCTTGTTTGAGTAAACCCTAGAATTGAGATCCAAATGCCCGCTCAAATAATTAT 1886 | || || | ||| ||| ||||| ||| ||| | || |||| || || |||||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1887 GTGGGCCTAGTGAACGAGCCCACATAGTCTTTCCCGTCCGACTATCGCCCTCGATGATAA 1946 || || | ||| | |||||||| |||||||| || | ||| || || || || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1947 T--ACTAATAGGTCTCTCCGGCCGCGCAGCGGAACTCT---TTCCAAAATAATTTTCAGC 2001 | ||| ||||||| || || | |||| || | | |||||||| || || Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCG---CTGTCGGATGAAAAATAATCATCTGC 2249045 Query 2002 CCATTGTCTCATCTCGTCTGGCACGTTAGTAAATGATGAGACG 2044 ||||| | ||| | | ||| ||||| || || || || ||| Sbjct 2249044 CCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGACACG 2249002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8172667314592