Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_001828.1 Length=2597 Score E Sequences producing significant alignments: (Bits) Value seq16 167 4e-38 seq13 163 5e-37 seq11 159 6e-36 >seq16 Length=188620566 Score = 167 bits (184), Expect = 4e-38 Identities = 254/360 (71%), Gaps = 10/360 (3%) Strand=Plus/Minus Query 1581 CTTTAATTTGAACTGGCTTACCGTACTTGCAGTTTGATTGCCAATCTCTCTGGGCCCCCA 1640 |||| || ||||| || || | ||||||||| |||| |||||| ||||| || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1641 GCAATTCTTTCCAGTGCTTTAGCTTTAGATAATGCGGTGCGATGTCATCAATGACGTTAT 1700 | ||||| |||||||| |||| | | || || | || |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1701 ACTGCACGTCGTTTGAATAGACCCTGGTATTGAAGTCCAAATGTCCACTCAGATAATTAT 1760 | | ||| ||||| || | ||| | | ||| ||||| |||| ||||| | |||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1761 GTGGGCCTAACGCACGCGCCCACATCGTCTTCCCTGTCCTTGAATCACCTTCTATGACAA 1820 || || || | | |||||||| ||||| || || |||||||||||||| || | | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1821 T--ACTCATGGGTCTATTTGGCCGCGCAGCGGAACCAGCTCCAAAATAAACATCCGCCCA 1878 | ||| | ||||| ||| || | |||| | | | ||||||| |||| ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1879 CTCTTGCATCTCATCGGGAACGTTAGTGAAAGACGAGAGGGGAAACGGAGGAACCCATGG 1938 | |||||| | | || ||||| |||||||| || | || | ||| |||||||| Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGACACGGCGTATGGACTTACCCATGG 2248982 >seq13 Length=197258317 Score = 163 bits (180), Expect = 5e-37 Identities = 256/364 (70%), Gaps = 8/364 (2%) Strand=Plus/Plus Query 1547 CCAGGATTGCAAAGCACGATTGCTGGGATTCCGCCTTTAATTTGAACTGGCTTACCGTAC 1606 || || ||||| || | ||||| ||| || || ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1607 TTGCAGTTTGATTGCCAATCTCTCTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTT 1666 |||||||| || ||||||| | || || || | || |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1667 AGATAATGCGGTGCGATGTCATCAATGACGTTATACTGCACGTCGTTTGAATAGACCCTG 1726 || || || |||| |||||||| |||| ||| || | ||||||||||| |||| | Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1727 G--TATTGAAGTCCAAATGTCCACTCAGATAATTATGTGGGCCTAACGCACGCGCCCACA 1784 | |||| ||||| ||| |||| | || |||||| || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1785 TCGTCTTCCCTGTCCTTGAATCACCTTCTATGACAATACTCATGGGTCTATTTGGCCGCG 1844 | || || |||||||| ||||||| |||||||| || | | ||||| | ||||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCG 89851494 Query 1845 CAGCGGAACCAGCTCCAAAATAAACATCCGCCCACTCTTGCATCTCATCGGGAACGTTAG 1904 |||||| |||||| || ||| ||||| | ||||| || || || || |||| Sbjct 89851495 CAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATTAG 89851554 Query 1905 TGAA 1908 |||| Sbjct 89851555 TGAA 89851558 Score = 95.1 bits (104), Expect = 2e-16 Identities = 250/377 (66%), Gaps = 6/377 (2%) Strand=Plus/Plus Query 1662 GCTTTAGATAATGCGGTGCGATGTCATCAATGACGTTATACTGCACGTCGTTTGAATAGA 1721 |||| | || || |||| |||||||| |||| ||| || | ||| |||||| ||| Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942 Query 1722 CCCTGGTATTGAAGTCCAAATGTCCACTCAGATAATTATGTGGGCCTAACGCACGCGCCC 1781 | | | |||| |||||| || |||| | || |||||| || | | | |||| Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCC 172134001 Query 1782 ACATCGTCTTCCCTGTCCTTGAATCACCTTCTATGACAATACT--CATGGGTCTATTTGG 1839 |||| || || ||||| || |||| |||||||||| | |||| | | ||||| || Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTCTATG--ATTACTGACTTTGGTCTCACCGG 172134059 Query 1840 CCGCGCAGCGGAACCAGCTCCAAAATAAACATCCGCCCACTCTTGCATCTCATCGGGAAC 1899 ||| ||||||| ||||| || ||| ||||| ||||||| || || | || Sbjct 172134060 CCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTAC 172134119 Query 1900 GTTAGTGAAAGACGAGAGGGGAAACGGAGGAACCCATGGTTCCGGAGCCTTGGCGAATAT 1959 |||||||| || | || || ||| |||||||| | | || | | | | Sbjct 172134120 ATTAGTGAAGCTTGATAACGGGAATGGACATACCCATGGAGCTGTAGGTATTTCATAGAC 172134179 Query 1960 TCTTTCTAGATTTGAGCGGATGTTATGATTATGCAGGACAAAATCTTTTGGCTGTTCTTC 2019 ||| || || || || |||||| |||| || | || ||| ||| | || ||||| || Sbjct 172134180 TCTATCCAGGTTGAAGTTGATGTTGTGATGCTGTAAGAGAAAGTCTCTGGGTTGTTCATC 172134239 Query 2020 TTTTA-AAACTGCCATG 2035 | | | || |||| ||| Sbjct 172134240 TCTAATAACCTGCAATG 172134256 >seq11 Length=168460249 Score = 159 bits (176), Expect = 6e-36 Identities = 335/497 (67%), Gaps = 7/497 (1%) Strand=Plus/Minus Query 1540 ACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATTCCGCCTTTAATTTGAACTGGCTT 1599 |||| | || || ||||| |||| ||||| ||| || || ||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1600 ACCGTACTTGCAGTTTGATTGCCAATCTCTCTGGGCCCCCAGCAATTCTTTCCAGTGCTT 1659 ||||| ||||||| || ||||||| || || || || | || |||||||||||| | Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCAT 165527491 Query 1660 TAGCTTTAGATAATGCGGTGCGATGTCATCAATGACGTTATACTGCACGTCGTTTGAATA 1719 | || || || |||| |||||||| |||| ||| || | ||| |||||| | Sbjct 165527490 GA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437 Query 1720 GACCCTGGTATTGAAGTCCAAATGTCCACTCAGATAATTATGTGGGCCTAACGCACGCGC 1779 ||| | | ||| ||||| ||| |||| | || |||||| || || | | || Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377 Query 1780 CCACATCGTCTTCCCTGTCCTTGAATCACCTTCTATGACAATACTCATGGGTCTATTTGG 1839 |||||| || || | |||||| |||| ||||| ||||| | | | ||||| | || Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGG 165527317 Query 1840 CCGCGCAGCGGAACCAGCTCCAAAATAAACATCCGCCCACTCTTGCATCTCATCGGGAAC 1899 ||||||||||| ||||| || ||| ||||| ||||||| || || || || Sbjct 165527316 CCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTAC 165527257 Query 1900 GTTAGTGAAAGACGAGAGGGGAAACGGAGGAACCCATGGTTCCGGAGCCTTGGCGAATAT 1959 |||||||| || | || || ||| |||||||| | | || | | | | Sbjct 165527256 ATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGAGCTGTAGGGATTTCATAGAC 165527197 Query 1960 TCTTTCTAGATTTGAGCGGATGTTATGATTATGCAGGACAAAATCTTTTGGCTGTTCTTC 2019 ||| || || || || |||||| |||| || | | ||| ||| | || ||||| || Sbjct 165527196 TCTATCCAGGTTGTAGTTGATGTTGTGATGCTGTAACAGAAAGTCTCTGGGTTGTTCATC 165527137 Query 2020 TTTTA-AAACTGCCATG 2035 | | | || |||| ||| Sbjct 165527136 TCTAATAACCTGCAATG 165527120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8201466847024