Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_001928.2 Length=2632 Score E Sequences producing significant alignments: (Bits) Value seq16 156 7e-35 seq13 134 2e-28 seq11 113 7e-22 >seq16 Length=188620566 Score = 156 bits (172), Expect = 7e-35 Identities = 238/336 (71%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1750 CTTTAATTTGAACCGGCTTGCCGTACTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCCA 1809 |||| || |||||||| || | ||||||||| |||| ||||||||| |||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1810 GCAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTAT 1869 | ||||| |||||||| |||| | || ||| | | |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1870 ACTCCACTTCGTTCGAATAGACGCGACCATTGAAGTCCAGGTGTCCACTGAGATAGTTAT 1929 | ||||| ||||| || | || | ||| ||||| | | ||||| | ||| |||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1930 GTGGGCCTAACGCACGTGCCCACATCGTCTTCCCTGTCCTTGAATCACCTTCGACTATGA 1989 || || || | | ||||||||| ||||| || || |||||||||||||| | ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1990 --GACTCAATGGTCTGTCTGGCCGCGCAGCGGAACCACTCCCAAAATAATCATCCGCCCA 2047 |||| | ||||| ||| || | |||| | |||||||||||| ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 2048 CTCCTGCATCTCCTCGGGAACGGCCGTGAAAGAGGA 2083 | ||||| | | || ||| ||||||||| || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 134 bits (148), Expect = 2e-28 Identities = 222/316 (70%), Gaps = 12/316 (4%) Strand=Plus/Plus Query 1708 AACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATTCCTCCTTTAATTTGAACCGGCT 1767 |||| | || || ||||| || | ||||| ||| || |||||||| | || |||| Sbjct 89851193 AACCAACTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCT 89851252 Query 1768 TGCCGTACTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCT 1827 || |||| ||||| || |||||||| | || ||| || || | || ||||||||||||| Sbjct 89851253 TGTCGTATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCT 89851312 Query 1828 TTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAAT 1887 | | || || || |||| | |||||| |||| ||| || || || ||||| || Sbjct 89851313 TGA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGA 89851366 Query 1888 AGACGCGACC--ATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACG 1945 |||| | |||| ||||| || |||| | ||||||||| || || | | Sbjct 89851367 AGACTTTTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCT 89851426 Query 1946 TGCCCACATCGTCTTCCCTGTCCTTGAATCACCTTCGACTATGA--GACTCAATGGTCTG 2003 ||||||||| || || |||||||| ||||||| ||| | || | |||| |||||| Sbjct 89851427 TGCCCACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTC 89851484 Query 2004 TCTGGCCGCGCAGCGG 2019 ||||||||||||| Sbjct 89851485 ATCGGCCGCGCAGCGG 89851500 >seq11 Length=168460249 Score = 113 bits (124), Expect = 7e-22 Identities = 217/317 (68%), Gaps = 16/317 (5%) Strand=Plus/Minus Query 1708 AACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATTCCTCCTTTAATTTGAACCGGCT 1767 ||||| | || || ||||| |||| ||||| ||| || |||||||| | || |||| Sbjct 165527611 AACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCT 165527552 Query 1768 TGCCGTACTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCT 1827 ||||||| ||||| | |||||||| | | ||| || || | || |||||||||||| Sbjct 165527551 TGCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCA 165527492 Query 1828 TTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAAT 1887 | | || || || |||| | |||||| |||| ||| || || | | ||| || Sbjct 165527491 TGA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGA 165527438 Query 1888 AGACGCGACCATTGAAGTCCAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGTG 1947 |||| ||| ||||| || |||| | ||||||||| || || | | || Sbjct 165527437 AGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTG 165527378 Query 1948 CCCACATCGTCTTCCCTGTCCTTGAATCACCTTCGACTATGA-----GACTCAATGGTCT 2002 ||||||| || || | |||||| |||| ||||| ||||| |||| |||||| Sbjct 165527377 CCCACATTGTTTTGCTTGTCCTGGAATTACCTT---TTATGATTGTTGACT--TTGGTCT 165527323 Query 2003 GTCTGGCCGCGCAGCGG 2019 ||||||||||||| Sbjct 165527322 CATCGGCCGCGCAGCGG 165527306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8313465028704