Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_001931.1 Length=2615 Score E Sequences producing significant alignments: (Bits) Value seq16 168 1e-38 seq13 161 2e-36 seq11 145 1e-31 >seq16 Length=188620566 Score = 168 bits (186), Expect = 1e-38 Identities = 257/364 (71%), Gaps = 18/364 (5%) Strand=Plus/Minus Query 1730 CTTTAATTTGAACAGGCTTGCCGTACTTGCAATTTGACTGCCAATTCTTTTGGGCCCCAA 1789 |||| || ||||| || || | ||||||||| |||| ||||| | |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1790 TCAATTCCTTCCAGTGCTTTAACTTTAGATAATGCGGTGCGACGTCATCAATGACGTTAT 1849 |||||||||||||| ||||| | | || || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1850 ACTCCACTTCGTCTGTGAACACTTTGGAATTGAAGTCTAGGTGTCCACTTAAATAATTAT 1909 | ||||| |||| | ||| || | | ||| ||||||| | |||||||||||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1910 GTGGGCCTAGTGCTCGAGCCCACATCGTCTTCCCTGTTCTCGAATCACCTTCTACTATGA 1969 || || | || || |||||||| ||||| || ||||| ||||||||||| | ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1970 --GACTTACTGGTCTTTCTGGCCGCGCAGCGGAACCTCTC----CCGAAATAATCGTCTG 2023 |||| | ||||| ||| || | |||| || || |||||||| |||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCG----CTGTCGGATGAAAAATAATCATCTG 2249046 Query 2024 CCCACTCTTGCATCTCGTCTGGAACGTTAGTAGACGAAGAGAGGGGAAACGGAGGAACCC 2083 |||| | |||||| | | ||| ||||| || | ||||| | || | ||| |||| Sbjct 2249045 CCCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGACACGGCGTATGGACTTACCC 2248986 Query 2084 ATGG 2087 |||| Sbjct 2248985 ATGG 2248982 >seq13 Length=197258317 Score = 161 bits (178), Expect = 2e-36 Identities = 255/363 (70%), Gaps = 12/363 (3%) Strand=Plus/Plus Query 1696 CCAGGATTGCATAGCACGATTGATGGGATCCCTCCTTTAATTTGAACAGGCTTGCCGTAC 1755 || || |||||||| | ||||| ||| || |||||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1756 TTGCAATTTGACTGCCAATTCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTTTAACTTT 1815 ||||| || ||||||||||| | ||| || ||||| || || ||||||||||| || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAA---- 89851316 Query 1816 AGATAATGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTCTGTGAACAC--TT 1873 || || |||| | |||||| |||| ||| || || || |||| || ||| || || Sbjct 89851317 --GTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1874 TGGAATTGAAGTCTAGGTGTCCACTTAAATAATTATGTGGGCCTAGTGCTCGAGCCCACA 1933 | |||| ||| | || |||| || || |||||| || | | || ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1934 TCGTCTTCCCTGTTCTCGAATCACCTTCTACTATGA--GACTTACTGGTCTTTCTGGCCG 1991 | || || ||||| || ||||||| ||||| || | ||||| |||||| ||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCG 89851492 Query 1992 CGCAGCGGAACCTCTCCCGAAATAATCGTCTGCCCACTCTTGCATCTCGTCTGGAACGTT 2051 |||||||| | || || || |||||||| | ||||| || ||||| || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 2052 AGT 2054 ||| Sbjct 89851553 AGT 89851555 >seq11 Length=168460249 Score = 145 bits (160), Expect = 1e-31 Identities = 254/368 (69%), Gaps = 10/368 (3%) Strand=Plus/Minus Query 1689 ACCCTCACCAGGATTGCATAGCACGATTGATGGGATCCCTCCTTTAATTTGAACAGGCTT 1748 |||| | || || |||||||||| ||||| ||| || |||||||| | || ||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1749 GCCGTACTTGCAATTTGACTGCCAATTCTTTTGGGCCCCAATCAATTCCTTCCAGTGCTT 1808 |||||| ||||| | ||||||||||| ||| || ||||| || || ||||||||| | Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCAT 165527491 Query 1809 TAACTTTAGATAATGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTCTGTGAA 1868 || || || |||| | |||||| |||| ||| || || | | || || ||| Sbjct 165527490 GAA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437 Query 1869 CACTTTGGAATTGAAGTCTAGGTGTCCACTTAAATAATTATGTGGGCCTAGTGCTCGAGC 1928 ||||| ||| ||| | || |||| || || |||||| || | | || || Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377 Query 1929 CCACATCGTCTTCCCTGTTCTCGAATCACCTTCTACTAT--GAGACTTACTGGTCTTTCT 1986 |||||| || || | ||| || |||| ||||| || || ||||| |||||| Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTT--TGGTCTCATC 165527319 Query 1987 GGCCGCGCAGCGGAACCTCTCCCGAAATAATCGTCTGCCCACTCTTGCATCTCGTCTGGA 2046 ||||||||||||| | || || || |||||||| ||||||| || ||||| Sbjct 165527318 GGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGT 165527259 Query 2047 ACGTTAGT 2054 || ||||| Sbjct 165527258 ACATTAGT 165527251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8259065911888