Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_001936.1
Length=2634
Score E
Sequences producing significant alignments: (Bits) Value
seq16 152 9e-34
seq13 120 5e-24
seq11 113 8e-22
>seq16
Length=188620566
Score = 152 bits (168), Expect = 9e-34
Identities = 178/241 (74%), Gaps = 6/241 (2%)
Strand=Plus/Minus
Query 1783 CTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAA 1842
|||| || |||||||| |||| || || || || | |||||||| ||||| || ||||
Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274
Query 1843 TCAATTCCTTCCAGTGCTTTAGCTTTAGGTAATGCGGAGCGACGTCATCAATGACGTTAT 1902
|||||||||||||| |||| | || || |||| |||||| |||||||
Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACAT------TGTGGGTTAACGTTATCAATAACGTTAT 2249220
Query 1903 ACTTGACGTCATTTGAGAAAACCCTAGAATTGAAATCAAGATGGCCGCTCAAGTAATTAT 1962
| | || || || ||||||||| ||| ||| || || | || || || || |||||||
Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160
Query 1963 GTGGGCCTAACGACCTAGCCCACATTGTCTTGCCCGTTCTTGAACCACCTTCTATGATTA 2022
|| || || || || |||||||||||||| || ||||||||| ||||||| || ||||
Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100
Query 2023 T 2023
|
Sbjct 2249099 T 2249099
>seq13
Length=197258317
Score = 120 bits (132), Expect = 5e-24
Identities = 247/367 (67%), Gaps = 8/367 (2%)
Strand=Plus/Plus
Query 1659 AGGAAGATGAATTTGGCAtttttttCAGTCCACTCTCTTAGAGCCGAGTTCTCGGCTTTG 1718
||||||||||| | |||||||| ||||||| | | ||| || | | | ||||
Sbjct 89851111 AGGAAGATGAACATAGCATTTTTGAGGGTCCACTATTTCAGACCCAACATGCATGGTTTG 89851170
Query 1719 TCGAGGAAATCTTTATAACTGGACCCCTCTCCAGGATTGCACAGCACGATTGATGGGATT 1778
| | | ||| ||| | || |||| || ||||| || | ||||| ||| ||
Sbjct 89851171 TTCAAGTGATCCCAATATGAAAAACCAACTCCTGGGTTGCATAGTATGATTGTTGGTATG 89851230
Query 1779 CCACCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAGTCCCTTTGGGCC 1838
|| ||||| | || ||||| | ||||| ||||| |||||||| | ||| ||
Sbjct 89851231 CCTCCTTTGACAAGACTTGGCTTGTCGTATTTGCAGTTAGACTGCCAATTTTGTTGAGCT 89851290
Query 1839 CCAATCAATTCCTTCCAGTGCTTTAGCTTTAGGTAATGCGGAGCGACGTCATCAATGACG 1898
||||| || || ||||||| |||| | ||| || || | | |||||| |||| |
Sbjct 89851291 CCAATAAACTCTTTCCAGT------GCTTGAAGTATTGTGGTGGTATGTCATCGATGATG 89851344
Query 1899 TTATACTTGACGTCATTTGAGAAAAC--CCTAGAATTGAAATCAAGATGGCCGCTCAAGT 1956
|| || | ||||| |||||||| || | |||| || | ||| || | | ||
Sbjct 89851345 TTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCTTGAGGTCCATATGACCACATACGT 89851404
Query 1957 AATTATGTGGGCCTAACGACCTAGCCCACATTGTCTTGCCCGTTCTTGAACCACCTTCTA 2016
| |||||| || || || || ||||||||||| || || || || ||| ||| |||||
Sbjct 89851405 AGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTTTACCTGTCCTGGAATCACTTTCTA 89851464
Query 2017 TGATTAT 2023
|||||||
Sbjct 89851465 TGATTAT 89851471
>seq11
Length=168460249
Score = 113 bits (124), Expect = 8e-22
Identities = 192/279 (69%), Gaps = 6/279 (2%)
Strand=Plus/Minus
Query 1743 CCCTCTCCAGGATTGCACAGCACGATTGATGGGATTCCACCTTTAATTTGAACCGGCTTT 1802
||| |||| || ||||| |||| ||||| ||| || || ||||| | || |||||
Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550
Query 1803 CCATATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATCAATTCCTTCCAGTGCTTT 1862
|| ||||| |||| |||||||| | | ||| || ||||| || || ||||||||| |
Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490
Query 1863 AGCTTTAGGTAATGCGGAGCGACGTCATCAATGACGTTATACTTGACGTCATTTGAGAAA 1922
| ||| || || | | |||||| |||| ||| || | ||| ||||||||
Sbjct 165527489 AA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436
Query 1923 ACCCTAGAATTGAAATCAAGATGGCCGCTCAAGTAATTATGTGGGCCTAACGACCTAGCC 1982
|| | ||| || | ||| || | | ||| |||||| || || || || |||
Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376
Query 1983 CACATTGTCTTGCCCGTTCTTGAACCACCTTCTATGATT 2021
|||||||| |||| || || ||| ||||| |||||||
Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATT 165527337
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8319864924800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |