Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_001936.1 Length=2634 Score E Sequences producing significant alignments: (Bits) Value seq16 152 9e-34 seq13 120 5e-24 seq11 113 8e-22 >seq16 Length=188620566 Score = 152 bits (168), Expect = 9e-34 Identities = 178/241 (74%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 1783 CTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAA 1842 |||| || |||||||| |||| || || || || | |||||||| ||||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1843 TCAATTCCTTCCAGTGCTTTAGCTTTAGGTAATGCGGAGCGACGTCATCAATGACGTTAT 1902 |||||||||||||| |||| | || || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACAT------TGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1903 ACTTGACGTCATTTGAGAAAACCCTAGAATTGAAATCAAGATGGCCGCTCAAGTAATTAT 1962 | | || || || ||||||||| ||| ||| || || | || || || || ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1963 GTGGGCCTAACGACCTAGCCCACATTGTCTTGCCCGTTCTTGAACCACCTTCTATGATTA 2022 || || || || || |||||||||||||| || ||||||||| ||||||| || |||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 2023 T 2023 | Sbjct 2249099 T 2249099 >seq13 Length=197258317 Score = 120 bits (132), Expect = 5e-24 Identities = 247/367 (67%), Gaps = 8/367 (2%) Strand=Plus/Plus Query 1659 AGGAAGATGAATTTGGCAtttttttCAGTCCACTCTCTTAGAGCCGAGTTCTCGGCTTTG 1718 ||||||||||| | |||||||| ||||||| | | ||| || | | | |||| Sbjct 89851111 AGGAAGATGAACATAGCATTTTTGAGGGTCCACTATTTCAGACCCAACATGCATGGTTTG 89851170 Query 1719 TCGAGGAAATCTTTATAACTGGACCCCTCTCCAGGATTGCACAGCACGATTGATGGGATT 1778 | | | ||| ||| | || |||| || ||||| || | ||||| ||| || Sbjct 89851171 TTCAAGTGATCCCAATATGAAAAACCAACTCCTGGGTTGCATAGTATGATTGTTGGTATG 89851230 Query 1779 CCACCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAGTCCCTTTGGGCC 1838 || ||||| | || ||||| | ||||| ||||| |||||||| | ||| || Sbjct 89851231 CCTCCTTTGACAAGACTTGGCTTGTCGTATTTGCAGTTAGACTGCCAATTTTGTTGAGCT 89851290 Query 1839 CCAATCAATTCCTTCCAGTGCTTTAGCTTTAGGTAATGCGGAGCGACGTCATCAATGACG 1898 ||||| || || ||||||| |||| | ||| || || | | |||||| |||| | Sbjct 89851291 CCAATAAACTCTTTCCAGT------GCTTGAAGTATTGTGGTGGTATGTCATCGATGATG 89851344 Query 1899 TTATACTTGACGTCATTTGAGAAAAC--CCTAGAATTGAAATCAAGATGGCCGCTCAAGT 1956 || || | ||||| |||||||| || | |||| || | ||| || | | || Sbjct 89851345 TTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCTTGAGGTCCATATGACCACATACGT 89851404 Query 1957 AATTATGTGGGCCTAACGACCTAGCCCACATTGTCTTGCCCGTTCTTGAACCACCTTCTA 2016 | |||||| || || || || ||||||||||| || || || || ||| ||| ||||| Sbjct 89851405 AGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTTTACCTGTCCTGGAATCACTTTCTA 89851464 Query 2017 TGATTAT 2023 ||||||| Sbjct 89851465 TGATTAT 89851471 >seq11 Length=168460249 Score = 113 bits (124), Expect = 8e-22 Identities = 192/279 (69%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 1743 CCCTCTCCAGGATTGCACAGCACGATTGATGGGATTCCACCTTTAATTTGAACCGGCTTT 1802 ||| |||| || ||||| |||| ||||| ||| || || ||||| | || ||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1803 CCATATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATCAATTCCTTCCAGTGCTTT 1862 || ||||| |||| |||||||| | | ||| || ||||| || || ||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1863 AGCTTTAGGTAATGCGGAGCGACGTCATCAATGACGTTATACTTGACGTCATTTGAGAAA 1922 | ||| || || | | |||||| |||| ||| || | ||| |||||||| Sbjct 165527489 AA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1923 ACCCTAGAATTGAAATCAAGATGGCCGCTCAAGTAATTATGTGGGCCTAACGACCTAGCC 1982 || | ||| || | ||| || | | ||| |||||| || || || || ||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1983 CACATTGTCTTGCCCGTTCTTGAACCACCTTCTATGATT 2021 |||||||| |||| || || ||| ||||| ||||||| Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATT 165527337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8319864924800