Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_001938.1 Length=2601 Score E Sequences producing significant alignments: (Bits) Value seq16 138 2e-29 seq11 131 3e-27 seq13 127 3e-26 >seq16 Length=188620566 Score = 138 bits (152), Expect = 2e-29 Identities = 235/339 (69%), Gaps = 10/339 (3%) Strand=Plus/Minus Query 1717 CTTTAATTTGAACTGGCTTACCGTACTTGCAATTTGATTGCCAATCTTTCTGGGCCCCCA 1776 |||| || ||||| || || | ||||||||| |||| |||||| ||| | || || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1777 GCAATTCTTTCCAGTGCTTTAGCTTTAGATAATGCGGTGCGATGTCATCAATGACGTTAT 1836 | ||||| |||||||| |||| | | || || | || |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1837 ACTGCACATCATTCGAGAAGACTCGACCATTGAAGTCTAGGTGTCCACTGAGATAGTTAT 1896 | | |||||| || ||||| || | ||| ||||||| | ||||| | ||| |||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1897 GTGGGCCTAACGCACGCGCCCACATCGTCTTCCCTGTTCTTGAATCACCCTCGACGATGA 1956 || || || | | |||||||| ||||| || |||||||||||||| || | || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1957 T--ACTTACAGGTCTATCCGGCGGCGCAGCGTCACCCGTCCCGAAATAATTATCCGCCCA 2014 | ||| |||||| || | | |||| | | ||||||| ||| ||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 2015 TTCCTGCATCTCGTCAGGAACGTTAGTGAAAGAAGAGAC 2053 || ||||| | | || ||||| ||||||||||| || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGACAC 2249003 >seq11 Length=168460249 Score = 131 bits (144), Expect = 3e-27 Identities = 379/578 (66%), Gaps = 13/578 (2%) Strand=Plus/Minus Query 1591 TGAGGGTGATGAAGATCGCATTCTTGATAGTCCAGTTCTTGAGACCTGTATTTTCTGCTT 1650 ||||| |||||| | | ||||||| |||||| | ||| | ||| | |||| || Sbjct 165527694 TGAGGAAGATGAACACAACGTTCTTGAGAGTCCATTCCTTCAAACCCAACATGTCTGGTT 165527635 Query 1651 TGTCTAAGAACTCTTTATAGCTGGCA-CCCTCACCAGGATTGCAAAGCACGATTGCTGGG 1709 ||| ||| || ||| || | ||| | || || ||||| |||| ||||| ||| Sbjct 165527634 TGTTCAAGTGATCCCAATA--TGAAAACCCACTCCTGGGTTGCATAGCATGATTGTTGGT 165527577 Query 1710 ATTCCGCCTTTAATTTGAACTGGCTTACCGTACTTGCAATTTGATTGCCAATCTTTCTGG 1769 || || ||||| | || |||||| ||||| ||||| | || ||||||| | || Sbjct 165527576 ATGCCTCCTTTGAAAAGACTTGGCTTGCCGTATTTGCAGTAAGACTGCCAATTTCGTTGA 165527517 Query 1770 GCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTTAGATAATGCGGTGCGATGTCATCAATG 1829 || || | || |||||||||||| | | || || || |||| |||||||| ||| Sbjct 165527516 GCTCCAATAAACTCTTTCCAGTGCATGA-----AG-TATTGTGGTGGTATGTCATCGATG 165527463 Query 1830 ACGTTATACTGCACATCATTCGAGAAGACTCGACCATTGAAGTCTAGGTGTCCACTGAGA 1889 | ||| || | | | || ||||||||| ||| ||| | || |||| | Sbjct 165527462 ATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTGTGGTCCATATGACCACATATG 165527403 Query 1890 TAGTTATGTGGGCCTAACGCACGCGCCCACATCGTCTTCCCTGTTCTTGAATCACCCTCG 1949 ||||||||| || || | | |||||||| || || | ||| || |||| ||| | Sbjct 165527402 TAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTGCTTGTCCTGGAATTACCTTTT 165527343 Query 1950 ACGATGAT--ACTTACAGGTCTATCCGGCGGCGCAGCGTCACCCGTCCCGAAATAATTAT 2007 | ||| | |||| ||||| |||| |||||||| | || || || || Sbjct 165527342 ATGATTGTTGACTT--TGGTCTCATCGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAAT 165527285 Query 2008 CCGCCCATTCCTGCATCTCGTCAGGAACGTTAGTGAAAGAAGAGACTTGAAATGGAGGAA 2067 | |||||||| |||| || || || || |||||||| || | | |||||| | Sbjct 165527284 CTGCCCATTCTTGCAGGTCTTCTGGTACATTAGTGAAGCTTGATAACGGGAATGGACTTA 165527225 Query 2068 CCCACGGTTCCGGAGCCTTTGCGAATATTCGTTCTAGGTTAGAGCGGATGTTATGATTTT 2127 |||| || | | || || | | | || || ||||| || |||||| |||| | Sbjct 165527224 CCCATGGAGCTGTAGGGATTTCATAGACTCTATCCAGGTTGTAGTTGATGTTGTGATGCT 165527165 Query 2128 GTAATACAAAATCTTTTGGTTGTTCTTCCCTTAGAACC 2165 |||| | ||| ||| | |||||||| || || | |||| Sbjct 165527164 GTAACAGAAAGTCTCTGGGTTGTTCATCTCTAATAACC 165527127 >seq13 Length=197258317 Score = 127 bits (140), Expect = 3e-26 Identities = 319/478 (67%), Gaps = 20/478 (4%) Strand=Plus/Plus Query 1683 CCAGGATTGCAAAGCACGATTGCTGGGATTCCGCCTTTAATTTGAACTGGCTTACCGTAC 1742 || || ||||| || | ||||| ||| || || ||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1743 TTGCAATTTGATTGCCAATCTTTCTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTT 1802 ||||| || || ||||||| || || || || | || |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1803 AGATAATGCGGTGCGATGTCATCAATGACGTTATACTGCACATCATTCGAGAAGACTCGA 1862 || || || |||| |||||||| |||| ||| || | || || || ||||||||| Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1863 CC--ATTGAAGTCTAGGTGTCCACTGAGATAGTTATGTGGGCCTAACGCACGCGCCCACA 1920 | |||| ||| | || |||| | ||||||||| || || | | ||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1921 TCGTCTTCCCTGTTCTTGAATCACCCTCGACGATGAT--ACTTACAGGTCTATCCGGCGG 1978 | || || ||||| || ||||||| || | ||| || |||| ||||| |||| | Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCG 89851492 Query 1979 CGCAGCGTCACCCGTCCCGAAATAATTATCCGCCCATTCCTGCATCTCGTCAGGAACGTT 2038 ||||||| | || || || ||| ||||||| |||| || || || || || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 2039 AGTGAAAGAAGAGACTTGAAATGGAGGAACCCACGG----TTCCGGAGCCTTTGCGAATA 2094 |||||| || | | | |||||| ||| | || | |||| ||| | | Sbjct 89851553 AGTGAAGCTTGATAATGGGAATGGACTTACCTATGGAGCTATAGGGAG---TTG-ATAGA 89851608 Query 2095 TTCGTTCTAGGTTAGAGCGGATGTTATGATTTTGTAATACAAAATCTTTTGGTTGTTC 2152 || || ||||| || |||||| |||| ||||| | ||| ||| | |||||||| Sbjct 89851609 CTCTATCCAGGTTGTAGTTGATGTTGTGATGCTGTAACAGAAAGTCTCTAGGTTGTTC 89851666 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8214266639216