Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_001983.1 Length=2723 Score E Sequences producing significant alignments: (Bits) Value seq13 80.6 5e-12 seq16 78.8 2e-11 seq11 77.0 6e-11 >seq13 Length=197258317 Score = 80.6 bits (88), Expect = 5e-12 Identities = 167/248 (67%), Gaps = 2/248 (1%) Strand=Plus/Plus Query 1791 TCCAGGATTGCATAAAAAGATGGTGGGGATACCACCTTTAATATGAGTGGGCTTCCCGTA 1850 ||| || ||||||| | ||| || || || || ||||| | | || | ||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1851 CTTGACGTTAGATTGCCAGTCTCTTTGCGCGCCCATGAATTCTTTGAAATGTTTCAAATA 1910 ||| |||||| ||||| | | ||| || || || || ||||| | || || || || Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1911 ATGGGGATCGACGTCATCAATGACGTTATACCAAGCATCGTTGGAATAGA--TCTTACTG 1968 || || | |||||| |||| ||| || | | ||||| || ||| | || | Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1969 TTAAGATCCAAGTGGCCGCAAAGATAATTGTGAGGACCTAACGCACGTGCCCACATTGTT 2028 || || |||| || || || | || || || || || | | ||||||||||||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 2029 TTACCCGT 2036 ||||| || Sbjct 89851440 TTACCTGT 89851447 >seq16 Length=188620566 Score = 78.8 bits (86), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 1826 CTTTAATATGAGTGGGCTTCCCGTACTTGACGTTAGATTGCCAGTCTCTTTGCGCGCCCA 1885 |||| || ||| || || | ||||||| || | ||||||||||||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1886 TGAATTCTTTGAAATGTTTCAAATAATGGGGATCGACGTCATCAATGACGTTATA--CCA 1943 ||||| || | ||||| ||| | || || | |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1944 AGCATCGTTGGAATAGATCTTACTGTTAAGATCCAAGTGGCCGCAAAGATAATTGTGAGG 2003 ||||||| || | | | || || | || || | || | | |||||| || Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 2004 ACCTAACGCACGTGCCCACATTGTTTTACCCGTGCGACTATCGCCTTCAAT 2054 || || | | |||||||||||| || || || | ||| |||||||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAAT 2249105 >seq11 Length=168460249 Score = 77.0 bits (84), Expect = 6e-11 Identities = 161/240 (67%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 1791 TCCAGGATTGCATAAAAAGATGGTGGGGATACCACCTTTAATATGAGTGGGCTTCCCGTA 1850 ||| || ||||||| | ||| || || || || ||||| | | || | ||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1851 CTTGACGTTAGATTGCCAGTCTCTTTGCGCGCCCATGAATTCTTTGAAATGTTTCAAATA 1910 ||| || ||| ||||| | || ||| || || || || ||||| | || | || || Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1911 ATGGGGATCGACGTCATCAATGACGTTATACCAAGCATCGTTGGAATAGATCTTACTGTT 1970 || || | |||||| |||| ||| || ||| | ||| || ||| || |||| Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1971 AAGATCCAAGTGGCCGCAAAGATAATTGTGAGGACCTAACGCACGTGCCCACATTGTTTT 2030 | |||| || || || | || || || || || | | ||||||||||||||| Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8604660301072