Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_002046.1 Length=2642 Score E Sequences producing significant alignments: (Bits) Value seq13 174 3e-40 seq11 167 4e-38 seq16 159 6e-36 >seq13 Length=197258317 Score = 174 bits (192), Expect = 3e-40 Identities = 263/368 (71%), Gaps = 16/368 (4%) Strand=Plus/Plus Query 1717 CCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACTGGCTTGCCGTAT 1776 || || ||||| || | ||||| ||| || || ||||| | || ||||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1777 TTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTT 1836 ||||| || |||||||||| || ||| || || | || |||||||||||||| | Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGA----- 89851315 Query 1837 AGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGACTCGA 1896 || ||||| |||| | |||||| |||| ||| || || || ||||| || ||||| Sbjct 89851316 AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1897 CC--ATTGAAGTCCAGGTGTCCACTGAGGTAATTATGTGGGCCTAACGCACGTGCCCACA 1954 | |||| ||||| || |||| | ||| |||||| || || | | |||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1955 TCGTCTTCCCTGTTCTTGAATCACCTTCTACTATGA--GACTTAATGGTCTGTCTGGCCG 2012 | || || ||||| || ||||||| ||||| || | ||||| |||||| ||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTT--TGGTCTCATCGGCCG 89851492 Query 2013 CGCAGCGGAACCCGAA--CCAAAAAATTCATCCGCCCATTCTTGCATCTCGTCGGGAACG 2070 |||||||| | | | ||||| || ||| ||||||| ||||| || || || || Sbjct 89851493 CGCAGCGG--CTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 2071 TTAGTGAA 2078 |||||||| Sbjct 89851551 TTAGTGAA 89851558 Score = 113 bits (124), Expect = 8e-22 Identities = 249/370 (67%), Gaps = 5/370 (1%) Strand=Plus/Plus Query 1832 GCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGA 1891 |||| | ||||| |||| | |||||| |||| ||| || || | | ||| || ||| Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942 Query 1892 CTCGACCATTGAAGTCCAGGTGTCCACTGAGGTAATTATGTGGGCCTAACGCACGTGCCC 1951 || |||| ||||| || |||| | ||| |||||| || | | | ||||| Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCC 172134001 Query 1952 ACATCGTCTTCCCTGTTCTTGAATCACCTTCTACTATGA--GACTTAATGGTCTGTCTGG 2009 |||| || || |||||||| |||| |||||||| || | ||||| |||||| | || Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGATTACTGACTT--TGGTCTCACCGG 172134059 Query 2010 CCGCGCAGCGGAACCCGAACCAAAAAATTCATCCGCCCATTCTTGCATCTCGTCGGGAAC 2069 ||| ||||||| |||||| || ||| ||||||||||||| || || | || Sbjct 172134060 CCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTAC 172134119 Query 2070 GTTAGTGAAAGAGGAGAGTTGAAATGGAGGAACCCACGGTTCCGGAGCCTTGGCGAATAT 2129 |||||||| || | | |||||| ||||| || | | || | | | | Sbjct 172134120 ATTAGTGAAGCTTGATAACGGGAATGGACATACCCATGGAGCTGTAGGTATTTCATAGAC 172134179 Query 2130 CCTCTCTAAGTTGGAGCGGATGTTATGATTCTGCAAGACAAAATCTTTTGGCTGTTCTTC 2189 || || | |||| || |||||| |||| ||| |||| ||| ||| | || ||||| || Sbjct 172134180 TCTATCCAGGTTGAAGTTGATGTTGTGATGCTGTAAGAGAAAGTCTCTGGGTTGTTCATC 172134239 Query 2190 CCTTAAAACC 2199 || | |||| Sbjct 172134240 TCTAATAACC 172134249 >seq11 Length=168460249 Score = 167 bits (184), Expect = 4e-38 Identities = 334/492 (68%), Gaps = 10/492 (2%) Strand=Plus/Minus Query 1710 ACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACTGGCTT 1769 |||| | || || ||||| |||| ||||| ||| || || ||||| | || |||||| Sbjct 165527610 ACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTT 165527551 Query 1770 GCCGTATTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTT 1829 |||||||||||| | |||||||||| | ||| || || | || |||||||||||| | Sbjct 165527550 GCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCAT 165527491 Query 1830 TAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATA 1889 | || ||||| |||| | |||||| |||| ||| || || | | ||| || | Sbjct 165527490 GA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAA 165527437 Query 1890 GACTCGACCATTGAAGTCCAGGTGTCCACTGAGGTAATTATGTGGGCCTAACGCACGTGC 1949 |||| ||| ||||| || |||| | ||| |||||| || || | | ||| Sbjct 165527436 GACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGC 165527377 Query 1950 CCACATCGTCTTCCCTGTTCTTGAATCACCTTCTACTAT--GAGACTTAATGGTCTGTCT 2007 |||||| || || | ||| || |||| ||||| || || ||||| |||||| Sbjct 165527376 CCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTT--TGGTCTCATC 165527319 Query 2008 GGCCGCGCAGCGGAACCCGAACCAAAAAATTCATCCGCCCATTCTTGCATCTCGTCGGGA 2067 ||||||||||||| |||||| || ||| ||||||||||||| || || || Sbjct 165527318 GGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGT 165527259 Query 2068 ACGTTAGTGAAAGAGGAGAGTTGAAATGGAGGAACCCACGGTTCCGGAGCCTTGGCGAAT 2127 || |||||||| || | | |||||| ||||| || | | || | | | Sbjct 165527258 ACATTAGTGAAGCTTGATAACGGGAATGGACTTACCCATGGAGCTGTAGGGATTTCATAG 165527199 Query 2128 ATCCTCTCTAAGTTGGAGCGGATGTTATGATTCTGCAAGACAAAATCTTTTGGCTGTTCT 2187 | || || | |||| || |||||| |||| ||| || | ||| ||| | || ||||| Sbjct 165527198 ACTCTATCCAGGTTGTAGTTGATGTTGTGATGCTGTAACAGAAAGTCTCTGGGTTGTTCA 165527139 Query 2188 TCCCTTAAAACC 2199 || || | |||| Sbjct 165527138 TCTCTAATAACC 165527127 >seq16 Length=188620566 Score = 159 bits (176), Expect = 6e-36 Identities = 238/336 (71%), Gaps = 10/336 (3%) Strand=Plus/Minus Query 1751 CTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCA 1810 |||| || ||||| || || | ||| ||||| |||| ||||| ||| |||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1811 GCAATTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTAT 1870 | ||||| |||||||| |||| | |||| || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1871 ACTCCACTTCGTTCGAATAGACTCGACCATTGAAGTCCAGGTGTCCACTGAGGTAATTAT 1930 | ||||| ||||| || | || | ||| ||||| | | ||||| | ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1931 GTGGGCCTAACGCACGTGCCCACATCGTCTTCCCTGTTCTTGAATCACCTTCTACTATGA 1990 || || || | | ||||||||| ||||| || ||||||||||||||||| | ||| | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1991 --GACTTAATGGTCTGTCTGGCCGCGCAGCGGAACCCGAACCAAAAAATTCATCCGCCCA 2048 |||| | ||||| ||| || | |||| | || |||| | ||||| ||||| Sbjct 2249099 TTGACTGA--GGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 2049 TTCTTGCATCTCGTCGGGAACGTTAGTGAAAGAGGA 2084 || |||||| | | || ||||| |||||||| || Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8345464509184