Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_002048.1 Length=2584 Score E Sequences producing significant alignments: (Bits) Value seq16 150 3e-33 seq13 113 7e-22 seq11 89.7 8e-15 >seq16 Length=188620566 Score = 150 bits (166), Expect = 3e-33 Identities = 238/337 (71%), Gaps = 12/337 (4%) Strand=Plus/Minus Query 1559 CTTTAATTTGAACAGGCTTTCCGTACTTGCAATTTGATTGCCAATCTTTTTGGGCCCCAA 1618 |||| || ||||| || |||| ||||||||| |||| |||||| ||| |||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1619 TGAGTTCTTTCCAGTGCTTTAGCTTTAGATACTGCGGTGCGACGTCATCAATGACGTTAT 1678 | ||| |||||||| |||| | | || || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1679 ATTCCACTTCATTCGAATAGACCCTAGAATTGAAATCAAGATGACCGCTCAAGTAATTAT 1738 ||||||| || || || | ||| ||| ||| || || | || ||| || || ||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1739 GTGGGCCTAAGACCCGAGCCCACATCGTCTTCCCCGTTCGAGAGTCACCTTCAATGATAA 1798 || || || | |||||||| ||||| || |||| || ||||||||||| || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1799 T--ACTAATAGGTCTTTCCCGGCGCGCAGCGGCACTC-CTTCCAAAATAGTCATCAGCCC 1855 | ||| |||||| |||| | ||| || || | |||||| ||||| |||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGC-GCTGTCGGATGAAAAATAATCATCTGCCC 2249043 Query 1856 ACCTTAGCATCTCGTCCGGAACGTTAGTGAAAGAGGA 1892 | || |||| | | || ||||| |||||||| || Sbjct 2249042 ATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 113 bits (124), Expect = 7e-22 Identities = 252/374 (67%), Gaps = 12/374 (3%) Strand=Plus/Plus Query 1517 AACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACAGGCT 1576 |||| | || || ||||| || | ||||| ||| || |||||||| | || |||| Sbjct 89851193 AACCAACTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCT 89851252 Query 1577 TTCCGTACTTGCAATTTGATTGCCAATCTTTTTGGGCCCCAATGAGTTCTTTCCAGTGCT 1636 | |||| ||||| || || ||||||| || ||| || ||||| | ||||||||||||| Sbjct 89851253 TGTCGTATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCT 89851312 Query 1637 TTAGCTTTAGATACTGCGGTGCGACGTCATCAATGACGTTATATTCCACTTCATTCGAAT 1696 | | || || || |||| | |||||| |||| ||| || || || || || || Sbjct 89851313 TGA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGA 89851366 Query 1697 AGAC--CCTAGAATTGAAATCAAGATGACCGCTCAAGTAATTATGTGGGCCTAAGACCCG 1754 |||| | |||| || | |||||| | | ||| |||||| || || | Sbjct 89851367 AGACTTTTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCT 89851426 Query 1755 AGCCCACATCGTCTTCCCCGTTCGAGAGTCACCTTCAATGATAAT--ACTAATAGGTCTT 1812 |||||||| || || || || | || |||| ||| ||||| || ||| | ||||| Sbjct 89851427 TGCCCACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTC 89851484 Query 1813 TCCCGGCGCGCAGCGGCACTCCTTCCAAAATAGTCATCAGCCCACCTTAGCATCTCGTCC 1872 | | ||||||||||| |||||| || ||| ||||| | ||| || || Sbjct 89851485 ATCGGCCGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCT 89851544 Query 1873 GGAACGTTAGTGAA 1886 || || |||||||| Sbjct 89851545 GGTACATTAGTGAA 89851558 >seq11 Length=168460249 Score = 89.7 bits (98), Expect = 8e-15 Identities = 245/372 (66%), Gaps = 10/372 (3%) Strand=Plus/Minus Query 1517 AACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACAGGCT 1576 ||||| | || || ||||| |||| ||||| ||| || |||||||| | || |||| Sbjct 165527611 AACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCT 165527552 Query 1577 TTCCGTACTTGCAATTTGATTGCCAATCTTTTTGGGCCCCAATGAGTTCTTTCCAGTGCT 1636 | ||||| ||||| | || ||||||| | ||| || ||||| | |||||||||||| Sbjct 165527551 TGCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCA 165527492 Query 1637 TTAGCTTTAGATACTGCGGTGCGACGTCATCAATGACGTTATATTCCACTTCATTCGAAT 1696 | | || || || |||| | |||||| |||| ||| || || | | || || Sbjct 165527491 TGA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGA 165527438 Query 1697 AGACCCTAGAATTGAAATCAAGATGACCGCTCAAGTAATTATGTGGGCCTAAGACCCGAG 1756 |||| | ||| || | |||||| | | ||| |||||| || || | | Sbjct 165527437 AGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTG 165527378 Query 1757 CCCACATCGTCTTCCCCGTTCGAGAGTCACCTTCAATGATAAT--ACTAATAGGTCTTTC 1814 ||||||| || || | || | || | ||||| ||||| | ||| | ||||| Sbjct 165527377 CCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCAT 165527320 Query 1815 CCGGCGCGCAGCGGCACTCCTTCCAAAATAGTCATCAGCCCACCTTAGCATCTCGTCCGG 1874 | | ||||||||||| ||||| || ||| ||||| | ||| || || || Sbjct 165527319 CGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGG 165527260 Query 1875 AACGTTAGTGAA 1886 || |||||||| Sbjct 165527259 TACATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8159867522400