Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_002048.1
Length=2584
Score E
Sequences producing significant alignments: (Bits) Value
seq16 150 3e-33
seq13 113 7e-22
seq11 89.7 8e-15
>seq16
Length=188620566
Score = 150 bits (166), Expect = 3e-33
Identities = 238/337 (71%), Gaps = 12/337 (4%)
Strand=Plus/Minus
Query 1559 CTTTAATTTGAACAGGCTTTCCGTACTTGCAATTTGATTGCCAATCTTTTTGGGCCCCAA 1618
|||| || ||||| || |||| ||||||||| |||| |||||| ||| |||| || ||||
Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274
Query 1619 TGAGTTCTTTCCAGTGCTTTAGCTTTAGATACTGCGGTGCGACGTCATCAATGACGTTAT 1678
| ||| |||||||| |||| | | || || |||| |||||| |||||||
Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA------ACATTGTGGGTTAACGTTATCAATAACGTTAT 2249220
Query 1679 ATTCCACTTCATTCGAATAGACCCTAGAATTGAAATCAAGATGACCGCTCAAGTAATTAT 1738
||||||| || || || | ||| ||| ||| || || | || ||| || || |||||||
Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160
Query 1739 GTGGGCCTAAGACCCGAGCCCACATCGTCTTCCCCGTTCGAGAGTCACCTTCAATGATAA 1798
|| || || | |||||||| ||||| || |||| || ||||||||||| || |
Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100
Query 1799 T--ACTAATAGGTCTTTCCCGGCGCGCAGCGGCACTC-CTTCCAAAATAGTCATCAGCCC 1855
| ||| |||||| |||| | ||| || || | |||||| ||||| ||||
Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGC-GCTGTCGGATGAAAAATAATCATCTGCCC 2249043
Query 1856 ACCTTAGCATCTCGTCCGGAACGTTAGTGAAAGAGGA 1892
| || |||| | | || ||||| |||||||| ||
Sbjct 2249042 ATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006
>seq13
Length=197258317
Score = 113 bits (124), Expect = 7e-22
Identities = 252/374 (67%), Gaps = 12/374 (3%)
Strand=Plus/Plus
Query 1517 AACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACAGGCT 1576
|||| | || || ||||| || | ||||| ||| || |||||||| | || ||||
Sbjct 89851193 AACCAACTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCT 89851252
Query 1577 TTCCGTACTTGCAATTTGATTGCCAATCTTTTTGGGCCCCAATGAGTTCTTTCCAGTGCT 1636
| |||| ||||| || || ||||||| || ||| || ||||| | |||||||||||||
Sbjct 89851253 TGTCGTATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCT 89851312
Query 1637 TTAGCTTTAGATACTGCGGTGCGACGTCATCAATGACGTTATATTCCACTTCATTCGAAT 1696
| | || || || |||| | |||||| |||| ||| || || || || || ||
Sbjct 89851313 TGA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGA 89851366
Query 1697 AGAC--CCTAGAATTGAAATCAAGATGACCGCTCAAGTAATTATGTGGGCCTAAGACCCG 1754
|||| | |||| || | |||||| | | ||| |||||| || || |
Sbjct 89851367 AGACTTTTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCT 89851426
Query 1755 AGCCCACATCGTCTTCCCCGTTCGAGAGTCACCTTCAATGATAAT--ACTAATAGGTCTT 1812
|||||||| || || || || | || |||| ||| ||||| || ||| | |||||
Sbjct 89851427 TGCCCACATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTC 89851484
Query 1813 TCCCGGCGCGCAGCGGCACTCCTTCCAAAATAGTCATCAGCCCACCTTAGCATCTCGTCC 1872
| | ||||||||||| |||||| || ||| ||||| | ||| || ||
Sbjct 89851485 ATCGGCCGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCT 89851544
Query 1873 GGAACGTTAGTGAA 1886
|| || ||||||||
Sbjct 89851545 GGTACATTAGTGAA 89851558
>seq11
Length=168460249
Score = 89.7 bits (98), Expect = 8e-15
Identities = 245/372 (66%), Gaps = 10/372 (3%)
Strand=Plus/Minus
Query 1517 AACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGAACAGGCT 1576
||||| | || || ||||| |||| ||||| ||| || |||||||| | || ||||
Sbjct 165527611 AACCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCT 165527552
Query 1577 TTCCGTACTTGCAATTTGATTGCCAATCTTTTTGGGCCCCAATGAGTTCTTTCCAGTGCT 1636
| ||||| ||||| | || ||||||| | ||| || ||||| | ||||||||||||
Sbjct 165527551 TGCCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCA 165527492
Query 1637 TTAGCTTTAGATACTGCGGTGCGACGTCATCAATGACGTTATATTCCACTTCATTCGAAT 1696
| | || || || |||| | |||||| |||| ||| || || | | || ||
Sbjct 165527491 TGA-----AG-TATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGA 165527438
Query 1697 AGACCCTAGAATTGAAATCAAGATGACCGCTCAAGTAATTATGTGGGCCTAAGACCCGAG 1756
|||| | ||| || | |||||| | | ||| |||||| || || | |
Sbjct 165527437 AGACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTG 165527378
Query 1757 CCCACATCGTCTTCCCCGTTCGAGAGTCACCTTCAATGATAAT--ACTAATAGGTCTTTC 1814
||||||| || || | || | || | ||||| ||||| | ||| | |||||
Sbjct 165527377 CCCACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCAT 165527320
Query 1815 CCGGCGCGCAGCGGCACTCCTTCCAAAATAGTCATCAGCCCACCTTAGCATCTCGTCCGG 1874
| | ||||||||||| ||||| || ||| ||||| | ||| || || ||
Sbjct 165527319 CGGCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGG 165527260
Query 1875 AACGTTAGTGAA 1886
|| ||||||||
Sbjct 165527259 TACATTAGTGAA 165527248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8159867522400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |