Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_002510.1 Length=2764 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 7e-16 >seq13 Length=197258317 Score = 93.3 bits (102), Expect = 7e-16 Identities = 184/269 (68%), Gaps = 10/269 (4%) Strand=Plus/Plus Query 2344 CTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTATTTGGGGAGACCAGG 2403 ||||||||||| ||| |||| |||||| || | | ||| |||||||| ||| Sbjct 172134403 CTGGATTTAGCAGACTGTATGTATGGATGACAAATTTCAGACGTATTTGGGTGATTGAGG 172134462 Query 2404 TCGAAGAGTCTCTGATTTTGGCACTTGAACTTCCCTTCGAACTGGAGAAGCACATGTAGA 2463 || |||| ||| ||||||| || ||||| ||| ||| | ||| | | ||||| ||| Sbjct 172134463 TCAAAGAATCTTGGATTTTGACATTTGAATTTCTTTTCCATCTGCATCAAAACATGAAGA 172134522 Query 2464 TGAGGTTGGCCATCCTCGTGAAGCTCTCTGCAGATCTTGATATAT-TTCTTGTT---TGA 2519 ||||| | | | || ||||| || ||| ||||||| ||||||| | |||| | ||| Sbjct 172134523 TGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGATAGCGATATATATACTTGATCGCTGA 172134582 Query 2520 AG---CTGTGCTTATTTTCTGTATTTGCTCTAGGGCTTCCTCTTTTGTTAGAGAACATTT 2576 || || | |||| | ||| || || | ||||| | || | | ||||| Sbjct 172134583 AGGAATTGGTAGAACTTTC---AGTTGTTCAAGATAATATTCTTTGGATACATAGCATTT 172134639 Query 2577 TGGGAAAGTTAGGAAATAATTCTTGGCAT 2605 |||| | || | ||| || |||||||||| Sbjct 172134640 TGGGTATGTGATGAAGTAGTTCTTGGCAT 172134668 Score = 77.0 bits (84), Expect = 6e-11 Identities = 150/221 (68%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 2292 TCCCCATTCCAGTGTGTCTCCATCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTT 2351 |||||| || | | |||| || || || | || || ||||| | | |||||||| Sbjct 89851781 TCCCCAGTCGATTATGTCACCGTCTTTTTGCATATATCTTCTGACGAAGAAACTGGATTT 89851840 Query 2352 AGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTATTTGGGGAGACCAGGTCGAAGAG 2411 ||| ||| || |||||||| || | | ||| |||||||| | ||| |||| Sbjct 89851841 AGCAGACTGTATATTTGGATGACAAACTTCAGACATATTTGGGTGATTGATGTCAAAGAA 89851900 Query 2412 TCTCTGATTTTGGCACTTGAA--CTTCCCTTCGAACTGGAGAAGCACATGTAGATGAGGT 2469 ||| ||||||| || || || || ||| | ||| | | ||||||||||||||| Sbjct 89851901 TCTTGGATTTTGACATTTCAATTTTTTTTTTCAATCTGCATCAAAACATGTAGATGAGGT 89851960 Query 2470 TGGCCATCCTCGTGAAGCTCTCTGCAGATCTTGATATATTT 2510 | | || ||||| | ||||||||||| |||||| || Sbjct 89851961 TTACTGTCTTCGTGCAATTCTCTGCAGATGGCGATATACTT 89852001 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8732654053080