Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_002543.1 Length=3080 Score E Sequences producing significant alignments: (Bits) Value seq11 86.0 1e-13 seq16 84.2 4e-13 seq13 77.0 6e-11 >seq11 Length=168460249 Score = 86.0 bits (94), Expect = 1e-13 Identities = 245/372 (66%), Gaps = 15/372 (4%) Strand=Plus/Minus Query 2046 CCCTCACCAGGATTACAAAGTATAATGGTGGGGACCCCTCCTCTAATTTGAACCGGTTTC 2105 ||| | || || || || || || || || || | |||||| | | || || || Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 2106 CCGTATTTGCAATTGCTTTGCCAGTCCCTTTGGGCCCCGATGAGCTCTTTCCAATGCTTC 2165 ||||||||||| | ||||| | | ||| || || || | ||||||||| || Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTG---- 165527494 Query 2166 ATCTTCAAGTATGTCGGGGCTACGTCATCTATGACGTTATATTCCACTTCGTTGGAATAC 2225 | | |||||| || | || |||||| |||| ||| || || | | ||| || | Sbjct 165527493 --CATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 2226 ACGCGCATGTTGAAGTCGAGGTGTCCACACAAGTAGTTGTGTGTACCTAACGCTCTTGCC 2285 || ||||| ||| | || ||||| | |||||| ||| | || || | ||||||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 2286 CAGCACGTTTTTCCCGTTCTACTGTTCCCTTCTATGATAATGGA-TTTGGCCTTAT-GGC 2343 || ||||| | || || || |||| |||||| | || ||||| || || ||| Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGC 165527316 Query 2344 TGTCGGCAACAGGCCTG----CCAAAGTAATCATCGGCCCACTCTTGCATTTCTTCGGGG 2399 | ||| | ||| || |||||||| ||| ||||| ||||||| ||||| || Sbjct 165527315 CG--CGCAGC-GGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGT 165527259 Query 2400 ACGTTTGTGAAG 2411 || || |||||| Sbjct 165527258 ACATTAGTGAAG 165527247 >seq16 Length=188620566 Score = 84.2 bits (92), Expect = 4e-13 Identities = 223/334 (67%), Gaps = 19/334 (6%) Strand=Plus/Minus Query 2091 ATTTGAACCGGTTTCCCGTATTTGCAATTGCTTTGCCAGTCCCTTTGGGCCCCGATGAGC 2150 || ||||||||||| | ||| ||||| || ||||||||| ||||| || || | | Sbjct 2249328 ATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAAGTAAT 2249269 Query 2151 TCTTTCCAATGCTTCATCTTCAAGTATGTCGGGGCTACGTCATCTATGACGTTATATTCC 2210 || ||||| || | || || ||| ||| |||| ||| || |||||||||||| Sbjct 2249268 TCCTTCCAGTG-----TTTTAAACATTGT-GGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 2211 ACTTCGTTGGAATACACGCGCATG-TTGAAGTCGAGGTGTCCACACAAGTAGTTGTGTGT 2269 || ||||| || | || || | | || ||||| | | |||| || || || ||| | Sbjct 2249214 ACATCGTTAGAGAAAAC-CGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 2270 ACCTAACGCTCTTGCCCAGCACGTTTTTCCCGTTCTACTGTTCCCTTCTATGATAATGGA 2329 || || | ||||||||| || ||||| ||||| | ||||| || || || || Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096 Query 2330 -TTTGGCCTTATGGCTGTCGGCAACAGGCCTGCC------AAAGTAATCATCGGCCCACT 2382 | || || | | | || | || ||| | ||| |||||||| ||||| | Sbjct 2249095 CTGAGGTCTCAATG--GGCGTGA--AGCGCTGTCGGATGAAAAATAATCATCTGCCCATT 2249040 Query 2383 CTTGCATTTCTTCGGGGACGTTTGTGAAGGAGGA 2416 |||||| ||| || ||||| ||||| || || Sbjct 2249039 TTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 77.0 bits (84), Expect = 6e-11 Identities = 171/250 (68%), Gaps = 10/250 (4%) Strand=Plus/Plus Query 2168 CTTCAAGTATGTCGGGGCTACGTCATCTATGACGTTATATTCCACTTCGTTGGAATACAC 2227 ||| |||||| || | || |||||| |||| ||| || || | | ||| || | || Sbjct 172133884 CTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGAC 172133943 Query 2228 GCGCATGTTGAAGTCGAGGTGTCCACACAAGTAGTTGTGTGTACCTAACGCTCTTGCCCA 2287 |||||| ||| | || ||||| | |||||| ||| | || | | ||||||||| Sbjct 172133944 TTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCA 172134002 Query 2288 GCACGTTTTTCCCGTTCTACTGTTCCCTTCTATGA-TAATGGATTTGGCCTTA-TGGCTG 2345 ||||| || ||||| || |||||||||| || || ||||| || | ||| | Sbjct 172134003 CATTGTTTTGCCTGTTCTGGAATTACCTTCTATGATTACTGACTTTGGTCTCACCGGCCG 172134062 Query 2346 TCGGCAACAGGCCTG----CCAAAGTAATCATCGGCCCACTCTTGCATTTCTTCGGGGAC 2401 | ||| | ||| || |||||||| ||| ||||| ||||||| ||||| | || Sbjct 172134063 T--GCAGC-GGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTAC 172134119 Query 2402 GTTTGTGAAG 2411 || |||||| Sbjct 172134120 ATTAGTGAAG 172134129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 9743837153400