Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_002543.1
Length=3080
Score E
Sequences producing significant alignments: (Bits) Value
seq11 86.0 1e-13
seq16 84.2 4e-13
seq13 77.0 6e-11
>seq11
Length=168460249
Score = 86.0 bits (94), Expect = 1e-13
Identities = 245/372 (66%), Gaps = 15/372 (4%)
Strand=Plus/Minus
Query 2046 CCCTCACCAGGATTACAAAGTATAATGGTGGGGACCCCTCCTCTAATTTGAACCGGTTTC 2105
||| | || || || || || || || || || | |||||| | | || || ||
Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550
Query 2106 CCGTATTTGCAATTGCTTTGCCAGTCCCTTTGGGCCCCGATGAGCTCTTTCCAATGCTTC 2165
||||||||||| | ||||| | | ||| || || || | ||||||||| ||
Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTG---- 165527494
Query 2166 ATCTTCAAGTATGTCGGGGCTACGTCATCTATGACGTTATATTCCACTTCGTTGGAATAC 2225
| | |||||| || | || |||||| |||| ||| || || | | ||| || |
Sbjct 165527493 --CATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436
Query 2226 ACGCGCATGTTGAAGTCGAGGTGTCCACACAAGTAGTTGTGTGTACCTAACGCTCTTGCC 2285
|| ||||| ||| | || ||||| | |||||| ||| | || || | |||||||
Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376
Query 2286 CAGCACGTTTTTCCCGTTCTACTGTTCCCTTCTATGATAATGGA-TTTGGCCTTAT-GGC 2343
|| ||||| | || || || |||| |||||| | || ||||| || || |||
Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGC 165527316
Query 2344 TGTCGGCAACAGGCCTG----CCAAAGTAATCATCGGCCCACTCTTGCATTTCTTCGGGG 2399
| ||| | ||| || |||||||| ||| ||||| ||||||| ||||| ||
Sbjct 165527315 CG--CGCAGC-GGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGT 165527259
Query 2400 ACGTTTGTGAAG 2411
|| || ||||||
Sbjct 165527258 ACATTAGTGAAG 165527247
>seq16
Length=188620566
Score = 84.2 bits (92), Expect = 4e-13
Identities = 223/334 (67%), Gaps = 19/334 (6%)
Strand=Plus/Minus
Query 2091 ATTTGAACCGGTTTCCCGTATTTGCAATTGCTTTGCCAGTCCCTTTGGGCCCCGATGAGC 2150
|| ||||||||||| | ||| ||||| || ||||||||| ||||| || || | |
Sbjct 2249328 ATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAAGTAAT 2249269
Query 2151 TCTTTCCAATGCTTCATCTTCAAGTATGTCGGGGCTACGTCATCTATGACGTTATATTCC 2210
|| ||||| || | || || ||| ||| |||| ||| || ||||||||||||
Sbjct 2249268 TCCTTCCAGTG-----TTTTAAACATTGT-GGGTTAACGTTATCAATAACGTTATATTCC 2249215
Query 2211 ACTTCGTTGGAATACACGCGCATG-TTGAAGTCGAGGTGTCCACACAAGTAGTTGTGTGT 2269
|| ||||| || | || || | | || ||||| | | |||| || || || ||| |
Sbjct 2249214 ACATCGTTAGAGAAAAC-CGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156
Query 2270 ACCTAACGCTCTTGCCCAGCACGTTTTTCCCGTTCTACTGTTCCCTTCTATGATAATGGA 2329
|| || | ||||||||| || ||||| ||||| | ||||| || || || ||
Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGA 2249096
Query 2330 -TTTGGCCTTATGGCTGTCGGCAACAGGCCTGCC------AAAGTAATCATCGGCCCACT 2382
| || || | | | || | || ||| | ||| |||||||| ||||| |
Sbjct 2249095 CTGAGGTCTCAATG--GGCGTGA--AGCGCTGTCGGATGAAAAATAATCATCTGCCCATT 2249040
Query 2383 CTTGCATTTCTTCGGGGACGTTTGTGAAGGAGGA 2416
|||||| ||| || ||||| ||||| || ||
Sbjct 2249039 TTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006
>seq13
Length=197258317
Score = 77.0 bits (84), Expect = 6e-11
Identities = 171/250 (68%), Gaps = 10/250 (4%)
Strand=Plus/Plus
Query 2168 CTTCAAGTATGTCGGGGCTACGTCATCTATGACGTTATATTCCACTTCGTTGGAATACAC 2227
||| |||||| || | || |||||| |||| ||| || || | | ||| || | ||
Sbjct 172133884 CTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGAC 172133943
Query 2228 GCGCATGTTGAAGTCGAGGTGTCCACACAAGTAGTTGTGTGTACCTAACGCTCTTGCCCA 2287
|||||| ||| | || ||||| | |||||| ||| | || | | |||||||||
Sbjct 172133944 TTTTTTGTTGAGGTCCAATTG-CCACATATGTAGTTATGTCTTCCCATGGATCTTGCCCA 172134002
Query 2288 GCACGTTTTTCCCGTTCTACTGTTCCCTTCTATGA-TAATGGATTTGGCCTTA-TGGCTG 2345
||||| || ||||| || |||||||||| || || ||||| || | ||| |
Sbjct 172134003 CATTGTTTTGCCTGTTCTGGAATTACCTTCTATGATTACTGACTTTGGTCTCACCGGCCG 172134062
Query 2346 TCGGCAACAGGCCTG----CCAAAGTAATCATCGGCCCACTCTTGCATTTCTTCGGGGAC 2401
| ||| | ||| || |||||||| ||| ||||| ||||||| ||||| | ||
Sbjct 172134063 T--GCAGC-GGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTAC 172134119
Query 2402 GTTTGTGAAG 2411
|| ||||||
Sbjct 172134120 ATTAGTGAAG 172134129
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 9743837153400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |