Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_002555.1 Length=2622 Score E Sequences producing significant alignments: (Bits) Value seq16 179 6e-42 seq13 134 2e-28 seq11 131 3e-27 >seq16 Length=188620566 Score = 179 bits (198), Expect = 6e-42 Identities = 246/340 (72%), Gaps = 18/340 (5%) Strand=Plus/Minus Query 1734 CTTTAATTTGAACTGGCTTTCCGTATTTACAGTTTGATTGCCAATCCCTTTGGGCCCCAA 1793 |||| || ||||| || |||| ||| || || |||| |||||| || ||||| || |||| Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1794 TCAATTCTTTCCAGTGCTTTAACTTTAGATAGTGCGGTGCGATGTCATCGATGACGTTAT 1853 ||||| |||||||| ||||| | || ||| | | | || ||| || ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAA----ACATTGTGGGTTA--ACGTTATCAATAACGTTAT 2249220 Query 1854 ATTCAACATGATTTGAATAAACCCTAGGATTGAAATCGAGGTGACCACTCAAATAATTAT 1913 |||| |||| || || ||||| ||||||| || || | | |||||| |||||||||| Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1914 GGGCCCCTAATGCACGTGCCCACATCGTCTTTCCCGTTCGAGAATCACCTTCAATGATGA 1973 | || |||| | ||||||||| |||||||| |||| |||||||||||||| || | Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1974 T--ACTAATAGGTCGTTCCGGCCGCGCAGCGGCACCTCTC----CCAAAATAGTCATCTG 2027 | ||| ||||| || || | |||| || || |||||| ||||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCG----CTGTCGGATGAAAAATAATCATCTG 2249046 Query 2028 CCCAATCTTGCATCTCTCTCGGTACGTTAGTGAAAGAGGA 2067 |||| | |||||| || |||||||| |||||||| || Sbjct 2249045 CCCATTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGA 2249006 >seq13 Length=197258317 Score = 134 bits (148), Expect = 2e-28 Identities = 251/366 (69%), Gaps = 12/366 (3%) Strand=Plus/Plus Query 1700 CCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTTCCGTAT 1759 || || ||||| || | ||| ||| || || ||||| | || |||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1760 TTACAGTTTGATTGCCAATCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAACTTT 1819 || ||||| || ||||||| ||| || ||||| || |||||||||||||| || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAA---- 89851316 Query 1820 AGATAGTGCGGTGCGATGTCATCGATGACGTTATATTCAACATGATTTGAATAAAC--CC 1877 || || |||| ||||||||||||| ||| || ||||| | ||||| | || Sbjct 89851317 --GTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTT 89851374 Query 1878 TAGGATTGAAATCGAGGTGACCACTCAAATAATTATGGGCCCCTAATGCACGTGCCCACA 1937 | |||| || | ||||||| | || ||||| || || | | |||||||| Sbjct 89851375 TCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACA 89851434 Query 1938 TCGTCTTTCCCGTTCGAGAATCACCTTCAATGATGAT--ACTAATAGGTCGTTCCGGCCG 1995 | || || || || | ||||||| ||| ||||| || ||| | |||| |||||| Sbjct 89851435 TTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGCCG 89851492 Query 1996 CGCAGCGGCACCTCTCCCAAAATAGTCATCTGCCCAATCTTGCATCTCTCTCGGTACGTT 2055 ||||||||| | ||||| || ||||||||| | ||||| ||| ||||| || Sbjct 89851493 CGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACATT 89851552 Query 2056 AGTGAA 2061 |||||| Sbjct 89851553 AGTGAA 89851558 >seq11 Length=168460249 Score = 131 bits (144), Expect = 3e-27 Identities = 252/370 (68%), Gaps = 10/370 (3%) Strand=Plus/Minus Query 1694 CCCTCGCCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTT 1753 ||| | || || ||||| |||| ||| ||| || || ||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1754 CCGTATTTACAGTTTGATTGCCAATCCCTTTGGGCCCCAATCAATTCTTTCCAGTGCTTT 1813 |||||||| |||| || ||||||| | ||| || ||||| || |||||||||||| | Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATG 165527490 Query 1814 AACTTTAGATAGTGCGGTGCGATGTCATCGATGACGTTATATTCAACATGATTTGAATAA 1873 || || || |||| ||||||||||||| ||| || ||| | | ||||| | Sbjct 165527489 AA------GTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1874 ACCCTAGGATTGAAATCGAGGTGACCACTCAAATAATTATGGGCCCCTAATGCACGTGCC 1933 || | ||| || | ||||||| | || ||||| || || | | |||| Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1934 CACATCGTCTTTCCCGTTCGAGAATCACCTTCAATGATGAT--ACTAATAGGTCGTTCCG 1991 ||||| || || | || | |||| ||||| ||||| | ||| | |||| || Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1992 GCCGCGCAGCGGCACCTCTCCCAAAATAGTCATCTGCCCAATCTTGCATCTCTCTCGGTA 2051 ||||||||||||| | ||||| || ||||||||| ||||||| ||| |||| Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 2052 CGTTAGTGAA 2061 | |||||||| Sbjct 165527257 CATTAGTGAA 165527248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8281465548224