Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_002817.1 Length=2767 Score E Sequences producing significant alignments: (Bits) Value seq16 129 1e-26 seq13 104 4e-19 seq11 89.7 9e-15 >seq16 Length=188620566 Score = 129 bits (142), Expect = 1e-26 Identities = 151/201 (75%), Gaps = 5/201 (2%) Strand=Plus/Minus Query 1764 TTGCTTTGCCAGTCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCTTTAGATAATGCGGA 1823 |||||| ||||||| ||||| || |||| |||||||||||||| |||| | | || || Sbjct 2249300 TTGCTT-GCCAGTCTCTTTGTGCACCAAGTAATTCCTTCCAGTGTTTTAAACATTGTGGG 2249242 Query 1824 TCAACATCATCAATGACGTTATA--CCATGCGTCATTAGAATATACTTTTGGACTTAAGT 1881 | ||| | |||||| |||||||| ||| | || ||||| | || | ||| | |||| Sbjct 2249241 TTAACGTTATCAATAACGTTATATTCCA--CATCGTTAGAGAAAACCGTAGGATTCAAGT 2249184 Query 1882 CTAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCCCAAATAGTTTTGCCGG 1941 |||||| ||||| ||| ||||||||| || ||||| || ||||| || || || |||| Sbjct 2249183 CTAAATAACCACTTAAATAATTATGTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGG 2249124 Query 1942 TACGACTATCGCCTTCTATTA 1962 | | ||| ||||| |||| Sbjct 2249123 TTCTTGAATCACCTTCAATTA 2249103 >seq13 Length=197258317 Score = 104 bits (114), Expect = 4e-19 Identities = 205/301 (68%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 1698 CCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAACTTGAATTGGCTTTCCGTAT 1757 ||||| ||||| || | ||| || || ||||| ||||| || || ||||||| ||||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1758 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCTTTAGATAA 1817 || ||| ||||| | ||| || |||| || || ||||||||||| | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1818 TGCGGATCAACATCATCAATGACGTTATACCATGCGTCATTAGAATATAC-TTTTGGACT 1876 || || | ||||| |||| ||| || |||| || || | || |||| || Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTTTTTCTTCT 89851380 Query 1877 T-AAGTCTAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCCCAAATAGTTT 1935 | | ||| | ||||||||||| ||| |||||| || || || || ||||| || |||| Sbjct 89851381 TGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTTT 89851440 Query 1936 TGCCGGTACGACTATCGCCTTCTATTACAATACTATTGGGCCTCCAAGGCCGCGCAGCGG 1995 | || || | ||| | |||||| | || || || ||| ||||||||||||| Sbjct 89851441 TACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCGG 89851500 Query 1996 C 1996 | Sbjct 89851501 C 89851501 >seq11 Length=168460249 Score = 89.7 bits (98), Expect = 9e-15 Identities = 199/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Minus Query 1698 CCTGGATTGCAGAGGAAGATAGTGGGAATGCCGCCTTTAACTTGAATTGGCTTTCCGTAT 1757 ||||| ||||| || | ||| || || ||||| ||||| | || ||||||| |||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1758 TTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCAAAGAATTCCTTCCAGTGCTTTAGATAA 1817 || || ||||| | | ||| || |||| || || ||||||||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1818 TGCGGATCAACATCATCAATGACGTTATACCATGCGTCATTAGAATATACTTTTGGACTT 1877 || || | ||||| |||| ||| || |||| || || | |||||| | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1878 AAGTCTAAATGACCACATAAGTAATTATGTGGCCCTAATGACCTAGCCCAAATAGTTTTG 1937 ||| | ||||||||||| ||| |||||| || || || || ||||| || |||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTTG 165527364 Query 1938 CCGGTACGACTATCGCCTTCTATTACAATACTATTGGGCCTCCAAGGCCGCGCAGCGGC 1996 | || | || |||| ||| | | || || ||| |||||||||||||| Sbjct 165527363 CTTGTCCTGGAATTACCTTTTATGATTGTTGACTTTGGTCTCATCGGCCGCGCAGCGGC 165527305 Score = 77.0 bits (84), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 1272 GAAGTTCAGAAAACATTTGTGAATCCCCAATGCCTTCCTGAGGTTGTAGTTGAATCGTAT 1331 ||||||||| | ||||||| ||| ||| || ||||||| |||||| ||||| Sbjct 165517296 GAAGTTCAGGTATGCCTTGTGAAGATCCAGGTGCTTTCTTAGGTTGTTGTTGAACCGTAT 165517237 Query 1332 TTGAAGGTGTATGATGTCGTAATTCTTGAAGAACGGTCTTATGTGGTGTTTGGTTATCTT 1391 || || | ||| ||| | | | | |||| | | |||| || ||| ||| Sbjct 165517236 CTGCAGCTCGATGTAGTCCGTTTCCATCATACACGGACGTTGCAGGTGCTTCTTTACCTT 165517177 Query 1392 GAAATAAAGCGGATTTGTTATCTCCCAGGTAA--AAACGCCATTCTGAGCTTGATGCGCA 1449 ||| || || ||||| | |||||| | ||| |||| ||||| || |||||||| ||| Sbjct 165517176 GAAGTAGAGAGGATTGGATATCTCGGA--TAAGTAAACTCCATTTTGGGCTTGATGTGCA 165517119 Query 1450 GTGATGTCTTCCCCTGTGCGTAAATCCATG 1479 || || | |||||||||||||||||| Sbjct 165517118 GTAATTAACTTGCCTGTGCGTAAATCCATG 165517089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8742253892640