Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_002981.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq16 127 4e-26 >seq16 Length=188620566 Score = 127 bits (140), Expect = 4e-26 Identities = 169/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 1711 CTTTAATTTGAACAGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTTTGGGCCCCCA 1770 |||| || ||||| ||||| | ||||||| || ||||||||||||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1771 TGAACTCTTTAAAGTGCTTTAGATAGTGCGGATCGACGTCATCAATGACGTTATA--CCA 1828 || || || |||| |||| | | || || | |||| |||||| |||||||| ||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1829 GGCATCATTACTGTACACTTTTGGACTCAGGTCGAGATGACCGCACAAATAATTGTGTGG 1888 |||| ||| | | || | ||| ||| ||| | || ||| | |||||||| ||| Sbjct 2249213 --CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCT 2249156 Query 1889 TCCTAGTGACCTGGCCCACATTGTTTTTCCGGTACGACTATCACCCTCAATTA 1941 ||| | ||| || ||||||||||| |||||||| | |||||| ||||||| Sbjct 2249155 TCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTA 2249103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8684659002272