Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_002984.1 Length=2632 Score E Sequences producing significant alignments: (Bits) Value seq11 167 4e-38 seq13 161 2e-36 seq16 134 2e-28 >seq11 Length=168460249 Score = 167 bits (184), Expect = 4e-38 Identities = 276/397 (70%), Gaps = 10/397 (3%) Strand=Plus/Minus Query 1563 CCCTCTCCTGGATTGCACAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTT 1622 ||| ||||||| ||||| |||| ||||| ||| || |||||||| | || |||||| Sbjct 165527609 CCCACTCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTG 165527550 Query 1623 CCATATTTACAGTTGGACTGCCAATCCCTTTGGGCCCCTATCAATTCTTTCCAGTGCTTT 1682 || ||||| |||| |||||||||| | ||| || || || || |||||||||| Sbjct 165527549 CCGTATTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGT----- 165527495 Query 1683 AGCTTTAGGTATTGCGGAGCGACGTCATCAATGACGTTATATTCGGCTTCGTTTGAGTAA 1742 || | | |||||| || | | |||||| |||| ||| || || || | ||||||| | Sbjct 165527494 -GCATGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAG 165527436 Query 1743 ACCCTAGAATTGAAATCCAGGTGACCGCTAAGATAATTGTGCTTGCCTAACGAACGGGAC 1802 || | ||| |||| ||||| | | || || || | || || || | | | Sbjct 165527435 ACTTTTTTGTTGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCC 165527376 Query 1803 CACATCGTCTTCCCCGTTCTTGAGTCACCTTCTATGATTAT--ACTTCTAGCTCGCATTG 1860 ||||| || || | || || || | ||||| ||||||| | ||| | | || ||| | Sbjct 165527375 CACATTGTTTTGCTTGTCCTGGAATTACCTTTTATGATTGTTGACT--TTGGTCTCATCG 165527318 Query 1861 GCCGCGCAGCGGCATCCCTCCCAAAATAATCATCAGCCCACTCCTGTAACTCTTCTGGAA 1920 ||||||||||||| | ||||| || ||| ||||| || || | |||||||| | Sbjct 165527317 GCCGCGCAGCGGCTTGTAGACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTGGTA 165527258 Query 1921 CGAGAGTGAACGATGATAACGGAAATGGACATGCCCA 1957 | |||||| ||||||||| ||||||| | |||| Sbjct 165527257 CATTAGTGAAGCTTGATAACGGGAATGGACTTACCCA 165527221 >seq13 Length=197258317 Score = 161 bits (178), Expect = 2e-36 Identities = 270/388 (70%), Gaps = 12/388 (3%) Strand=Plus/Plus Query 1567 CTCCTGGATTGCACAGCACGATTGATGGGATTCCTCCTTTAATTTGAACTGGCTTTCCAT 1626 ||||||| ||||| || | ||||| ||| || |||||||| | || |||||| | | Sbjct 89851199 CTCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGT 89851258 Query 1627 ATTTACAGTTGGACTGCCAATCCCTTTGGGCCCCTATCAATTCTTTCCAGTGCTTTAGCT 1686 |||| ||||| |||||||||| ||| || || || || |||||||||| ||| Sbjct 89851259 ATTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGT------GCT 89851312 Query 1687 TTAGGTATTGCGGAGCGACGTCATCAATGACGTTATATTCGGCTTCGTTTGAGTAAAC-- 1744 | | |||||| || | | |||||| |||| ||| || || | ||||||||| | || Sbjct 89851313 TGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAATCAACGTCGTTTGAGAAGACTT 89851372 Query 1745 CCTAGAATTGAAATCCAGGTGACCGCTAAGATAATTGTGCTTGCCTAACGAACGGGACCA 1804 | |||| |||| ||||| | | || || || || || || || | | ||| Sbjct 89851373 TTTCTTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCA 89851432 Query 1805 CATCGTCTTCCCCGTTCTTGAGTCACCTTCTATGATTAT--ACTTCTAGCTCGCATTGGC 1862 ||| || || || || || || |||| |||||||||||| ||| | | || ||| ||| Sbjct 89851433 CATTGTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACT--TTGGTCTCATCGGC 89851490 Query 1863 CGCGCAGCGGCATCCCTCCCAAAATAATCATCAGCCCACTCCTGTAACTCTTCTGGAACG 1922 ||||||||||| | ||||| || ||| ||||| | || | |||||||| || Sbjct 89851491 CGCGCAGCGGCTTGTAGTCCAAAGTATGAATCTGCCCATTATTGCAGGTCTTCTGGTACA 89851550 Query 1923 AGAGTGAACGATGATAACGGAAATGGAC 1950 |||||| |||||| || ||||||| Sbjct 89851551 TTAGTGAAGCTTGATAATGGGAATGGAC 89851578 Score = 96.9 bits (106), Expect = 6e-17 Identities = 189/276 (68%), Gaps = 5/276 (2%) Strand=Plus/Plus Query 1684 GCTTTAGGTATTGCGGAGCGACGTCATCAATGACGTTATATTCGGCTTCGTTTGAGTAAA 1743 |||| | |||||| || | | |||||| |||| ||| || || || | ||||||| | | Sbjct 172133883 GCTTGAAGTATTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGA 172133942 Query 1744 CCCTAGAATTGAAATCCAGGTGACCGCTAAGATAATTGTGCTTGCCTAACGAACGGGACC 1803 | | |||| |||| || | || | || || || | || | || | | || Sbjct 172133943 CTTTTTTGTTGAGGTCCAATTGCCACATATG-TAGTTATGTCTTCCCATGGATCTTGCCC 172134001 Query 1804 ACATCGTCTTCCCCGTTCTTGAGTCACCTTCTATGATTA--TACTTCTAGCTCGCATTGG 1861 |||| || || || ||||| || | |||||||||||||| ||| | | || || || Sbjct 172134002 ACATTGTTTTGCCTGTTCTGGAATTACCTTCTATGATTACTGACT--TTGGTCTCACCGG 172134059 Query 1862 CCGCGCAGCGGCATCCCTCCCAAAATAATCATCAGCCCACTCCTGTAACTCTTCTGGAAC 1921 ||| |||||||| | | ||||| || ||| ||||| || || | |||||| | || Sbjct 172134060 CCGTGCAGCGGCTTGTATACCAAAGTATGAATCTGCCCATTCTTGCAGGTCTTCTAGTAC 172134119 Query 1922 GAGAGTGAACGATGATAACGGAAATGGACATGCCCA 1957 |||||| ||||||||| ||||||||| |||| Sbjct 172134120 ATTAGTGAAGCTTGATAACGGGAATGGACATACCCA 172134155 >seq16 Length=188620566 Score = 134 bits (148), Expect = 2e-28 Identities = 245/357 (69%), Gaps = 10/357 (3%) Strand=Plus/Minus Query 1603 CTTTAATTTGAACTGGCTTTCCATATTTACAGTTGGACTGCCAATCCCTTTGGGCCCCTA 1662 |||| || ||||| || |||| || || || || | ||||| || ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1663 TCAATTCTTTCCAGTGCTTTAGCTTTAGGTATTGCGGAGCGACGTCATCAATGACGTTAT 1722 ||||| |||||||| |||| |||| || |||| |||||| ||||||| Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAAC------ATTGTGGGTTAACGTTATCAATAACGTTAT 2249220 Query 1723 ATTCGGCTTCGTTTGAGTAAACCCTAGAATTGAAATCCAGGTGACCGCTAAGATAATTGT 1782 |||| | ||||| ||| ||||| ||| ||| || || | | ||| || | |||||| | Sbjct 2249219 ATTCCACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTAT 2249160 Query 1783 GCTTGCCTAACGAACGGGACCACATCGTCTTCCCCGTTCTTGAGTCACCTTCTATGATTA 1842 | | || || || | | |||||| ||||| || |||||||| |||||||| || |||| Sbjct 2249159 GTCTTCCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTA 2249100 Query 1843 T--ACTTCTAGCTCGCATTGGCCGCGCAGCGGCATCCCTCCCAAAATAATCATCAGCCCA 1900 | ||| || || || ||| || | |||| || |||||||||||| ||||| Sbjct 2249099 TTGACT--GAGGTCTCAATGGGCGTGAAGCGCTGTCGGATGAAAAATAATCATCTGCCCA 2249042 Query 1901 CTCCTGTAACTCTTCTGGAACGAGAGTGAACGATGATAACGGAAATGGACATGCCCA 1957 | || | ||| ||| ||| ||||| || || | | |||||| | |||| Sbjct 2249041 TTTTTGCATAACTTGTGGTACGTTCGTGAAAGAAGACACGGCGTATGGACTTACCCA 2248985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8313465028704