Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003199.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq13 82.4 1e-12 >seq13 Length=197258317 Score = 82.4 bits (90), Expect = 1e-12 Identities = 159/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 2251 TCTGAAATTGCCCCCAGTCGAGAATGTCCCCGTCCTTCTCGGTGTAGGATTTGACGTCGG 2310 ||||||| ||||||||||| | || ||||| |||| |||| | |||| | Sbjct 172134341 TCTGAAACATCCCCCAGTCGATTACATCACCGTCTTTCTGCATGTATCTTCTGACAAAGA 172134400 Query 2311 AGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGAGACCA 2370 | ||||||||||| |||||||| ||||| || | | ||| | ||||| | Sbjct 172134401 AACTGGATTTAGCAGACTGTATGTATGGATGACAAATTTCAGACGTATTTGGGTGATTGA 172134460 Query 2371 AGTCGAAGAATCGCATATTCTGGCACTTGAAATTCCCTTCGAACTGGATGAGAACATGCA 2430 ||| ||||||| ||| || || ||||| ||| ||| | ||| || | |||||| | Sbjct 172134461 GGTCAAAGAATCTTGGATTTTGACATTTGAATTTCTTTTCCATCTGCATCAAAACATGAA 172134520 Query 2431 AGTGAGGAGTCCCATCTTCGTGAAGCTCTCTGCAGATTCTAATATAtttttttGA 2485 ||||| | | |||||||| || ||| ||||||| |||||| | |||| Sbjct 172134521 GATGAGGCTTGTCGTCTTCGTGCAGTTCTATGCAGATAGCGATATATATACTTGA 172134575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8703858690560