Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003357.1 Length=2737 Score E Sequences producing significant alignments: (Bits) Value seq16 116 6e-23 seq13 95.1 2e-16 seq11 89.7 9e-15 >seq16 Length=188620566 Score = 116 bits (128), Expect = 6e-23 Identities = 185/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 1726 CTTTAATTTGAATTGGCTTCCCGTACTT-CGTGTTGCTTTGCCAGTCCCTTTGGGCCCCC 1784 |||| || |||| || || | |||||| | |||||| ||||||| ||||| || || Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTT-GCCAGTCTCTTTGTGCACCA 2249275 Query 1785 ATGAATTCTTTAAAGTGCTTTAGGTAGTGGGGGTCCACGTCATCAATGACGTTGTACCAC 1844 | ||||| || |||| |||| | || |||| |||| |||||| ||||| || | Sbjct 2249274 AGTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCC 2249215 Query 1845 GCATCATTGCTGTACACTTTTGGACTCAGGTCGAGATGACCACATAAATAATTGTGTGGG 1904 |||| || | | || | ||| ||| ||| | || ||||| ||||||||| ||| Sbjct 2249214 ACATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTT 2249155 Query 1905 CCCAATGATCTGGCCCACATTGTCTTCCCTGTACGACTCTCGCCCTCTATTACAATACTA 1964 ||||||||||| |||||||||||||| || || | || || || |||| || Sbjct 2249154 CCCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTCAATTATTATTGAC 2249095 Query 1965 TTAGGTCTCCATGGCCGCGCAGC 1987 | ||||||| |||| || | ||| Sbjct 2249094 TGAGGTCTCAATGGGCGTGAAGC 2249072 >seq13 Length=197258317 Score = 95.1 bits (104), Expect = 2e-16 Identities = 205/302 (68%), Gaps = 10/302 (3%) Strand=Plus/Plus Query 1692 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATTGGCTTCCCGTAC 1751 ||||| ||||| || | ||| || || || || ||||| | || ||||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1752 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTA- 1810 || ||| ||||| | ||| || || || || ||||| ||||||| | ||| Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1811 -GTGGGGGTCCACGTCATCAATGACGTTGTA--CCACGCATCATTGCTGTACACTTTTGG 1867 |||| ||| | |||||| |||| |||||| | ||| || || | | |||||| Sbjct 89851321 TGTGGTGGT--ATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTC 89851376 Query 1868 AC--TCAGGTCGAGATGACCACATAAATAATTGTGTGGGCCCAATGATCTGGCCCACATT 1925 | ||||| | ||||||||||| || || ||| ||||| ||||| ||||||||| Sbjct 89851377 TTCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATT 89851436 Query 1926 GTCTTCCCTGTACGACTCTCGCCCTCTATTACAATACTATTAGGTCTCCATGGCCGCGCA 1985 || || ||||| | || | ||||| | || || |||||| ||||||||| Sbjct 89851437 GTTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCA 89851496 Query 1986 GC 1987 || Sbjct 89851497 GC 89851498 >seq11 Length=168460249 Score = 89.7 bits (98), Expect = 9e-15 Identities = 169/247 (68%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 1692 CCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATTGGCTTCCCGTAC 1751 ||||| ||||| || | ||| || || || || ||||| | || ||||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1752 TTCGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGGTA- 1810 || || ||||| | | ||| || || || || ||||| ||||| | | ||| Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1811 -GTGGGGGTCCACGTCATCAATGACGTTGTACCACGCATCATTGCTGTACACTTTTGGAC 1869 |||| ||| | |||||| |||| |||||| || | || | | |||||| Sbjct 165527483 TGTGGTGGT--ATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGT 165527426 Query 1870 TCAGGTCGAGATGACCACATAAATAATTGTGTGGGCCCAATGATCTGGCCCACATTGTCT 1929 | |||| | ||||||||||| || || ||| ||||| ||||| ||||||||||| | Sbjct 165527425 TGTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTT 165527366 Query 1930 TCCCTGT 1936 | | ||| Sbjct 165527365 TGCTTGT 165527359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8649459573744