Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003418.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq16 96.9 6e-17 seq13 93.3 7e-16 seq11 80.6 5e-12 >seq16 Length=188620566 Score = 96.9 bits (106), Expect = 6e-17 Identities = 157/226 (69%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 1707 CTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCA 1766 |||| || ||||| || || | |||||| |||| ||||||||| ||||| || || | Sbjct 2249333 CTTTGATCTGAACCGGTTTTCTGTACTTGCACTTTGCTTGCCAGTCTCTTTGTGCACCAA 2249274 Query 1767 TGAATTCTTTAAAGTGTTTCAGATAATGCGGGTCAACATCATCTATAATGTTGAACCACG 1826 ||||| || ||||||| | | | || |||| ||| | ||| |||| ||| | | Sbjct 2249273 GTAATTCCTTCCAGTGTTTTAAACATTGTGGGTTAACGTTATCAATAACGTTATATTCCA 2249214 Query 1827 CATCGTTTGAATACACTTTAGGGCTTAGATCCAAGTGCCCACATAAATAATTATGTGGCC 1886 ||||||| || | || |||| | | || || | |||| ||||||||||||| | Sbjct 2249213 CATCGTTAGAGAAAACCGTAGGATTCAAGTCTAAATAACCACTTAAATAATTATGTCTTC 2249154 Query 1887 CCAAGGAACGGGCCCATTGTGTTTTCCCAGTTCTAGACTCCCCCTC 1932 |||| || | ||||| ||| || || ||||| || || || || Sbjct 2249153 CCAATGATCTTGCCCACATTGTCTTTCCGGTTCTTGAATCACCTTC 2249108 >seq13 Length=197258317 Score = 93.3 bits (102), Expect = 7e-16 Identities = 205/302 (68%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 1673 CCTGGATTGCAGAGGAAGATTGTTGGAATGCCTCCTTTAATTTGAACTGGCTTCCCGTAC 1732 ||||| ||||| || | ||||||||| ||||||||||| | || |||||| |||| Sbjct 89851201 CCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTAT 89851260 Query 1733 TTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTCAGATAA 1792 || ||| || ||||| | ||| || || || || ||||| |||| || | || Sbjct 89851261 TTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTAT 89851320 Query 1793 TGCGGGTCAACATCATCTATAATGTTG-AACCACGCATCGTTTGAATACAC-TTTAGGGC 1850 || || | ||||| || |||||| || || | |||||||| | || ||| | Sbjct 89851321 TGTGGTGGTATGTCATCGATGATGTTGTAATCA-ACGTCGTTTGAGAAGACTTTTTCTTC 89851379 Query 1851 TT-AGATCCAAGTGCCCACATAAATAATTATGTGGCCCCAAGGAACGGGCCCATTGTGTT 1909 || || |||| || ||||||| || |||||| ||||| || | ||||| |||| Sbjct 89851380 TTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTGTT 89851439 Query 1910 TTCCCAGTTCTAGACTCCCCCTCTAGAACTAAACTCAAAGGTCTCTGAGGCCGCGCAGCG 1969 || || || || || || | |||| | || | |||||| |||||||||||| Sbjct 89851440 TTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTTGGTCTCATCGGCCGCGCAGCG 89851499 Query 1970 GC 1971 || Sbjct 89851500 GC 89851501 >seq11 Length=168460249 Score = 80.6 bits (88), Expect = 5e-12 Identities = 161/239 (67%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1673 CCTGGATTGCAGAGGAAGATTGTTGGAATGCCTCCTTTAATTTGAACTGGCTTCCCGTAC 1732 ||||| ||||| || | ||||||||| ||||||||||| | || |||||| ||||| Sbjct 165527603 CCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTAT 165527544 Query 1733 TTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTCAGATAA 1792 || || || ||||| | | ||| || || || || ||||| |||| | | || Sbjct 165527543 TTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTAT 165527484 Query 1793 TGCGGGTCAACATCATCTATAATGTTGAACCACGCATCGTTTGAATACACTTTAGGGCTT 1852 || || | ||||| || |||||| | || | |||||| | ||||| | | Sbjct 165527483 TGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTTG 165527424 Query 1853 AGATCCAAGTGCCCACATAAATAATTATGTGGCCCCAAGGAACGGGCCCATTGTGTTTT 1911 | |||| || ||||||| || |||||| ||||| || | ||||| |||||| Sbjct 165527423 TGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8662259365936