Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12] 1,528 sequences; 3,027,844,945 total letters Query= NC_003434.1 Length=2746 Score E Sequences producing significant alignments: (Bits) Value seq13 96.9 6e-17 seq11 82.4 1e-12 >seq13 Length=197258317 Score = 96.9 bits (106), Expect = 6e-17 Identities = 209/306 (68%), Gaps = 10/306 (3%) Strand=Plus/Plus Query 1680 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1739 |||||| ||||| || | ||| || || || || ||||| | || |||||| |||| Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259 Query 1740 CTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1799 ||| || || ||||| | ||| || || || || || || ||||||| | ||| Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319 Query 1800 GTGAGGATCTACGTCATCGATGATGTTATA--CCACGCATCATTGCTGTAAAC-TTTGGG 1856 || || || ||||||||||||||| || | ||| || || | | || ||| Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCT 89851377 Query 1857 GCTT-AGATCTAAATGACCGCATAGGTAATTATGAGGCCCTAATGACCTAGCCCACATCG 1915 ||| || || | |||||| |||| ||| ||||| || || || || |||||||| | Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437 Query 1916 TTTTACCCGTACGACTGTCTCCCTCAATTACTAT--ACTTTGAGGCCTCAGAGGCCGCGC 1973 ||||||| || | || | || || | ||| ||||| || |||| |||||||| Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGC 89851495 Query 1974 AGCGGC 1979 |||||| Sbjct 89851496 AGCGGC 89851501 >seq11 Length=168460249 Score = 82.4 bits (90), Expect = 1e-12 Identities = 162/240 (68%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 1680 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1739 |||||| ||||| || | ||| || || || || ||||| | || |||||| ||||| Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545 Query 1740 CTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1799 ||| | || ||||| | | ||| || || || || || || ||||| | | ||| Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485 Query 1800 GTGAGGATCTACGTCATCGATGATGTTATACCACGCATCATTGCTGTAAACTTTGGGGCT 1859 || || || ||||||||||||||| || || | || | | ||||| | | Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425 Query 1860 TAGATCTAAATGACCGCATAGGTAATTATGAGGCCCTAATGACCTAGCCCACATCGTTTT 1919 | || | |||||| |||| ||| ||||| || || || || |||||||| ||||| Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8678259106176