Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Helianthus_20annuus_20[genbank_20GCA_5F002127325.1_202017-05-12]
1,528 sequences; 3,027,844,945 total letters
Query= NC_003434.1
Length=2746
Score E
Sequences producing significant alignments: (Bits) Value
seq13 96.9 6e-17
seq11 82.4 1e-12
>seq13
Length=197258317
Score = 96.9 bits (106), Expect = 6e-17
Identities = 209/306 (68%), Gaps = 10/306 (3%)
Strand=Plus/Plus
Query 1680 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1739
|||||| ||||| || | ||| || || || || ||||| | || |||||| ||||
Sbjct 89851200 TCCTGGGTTGCATAGTATGATTGTTGGTATGCCTCCTTTGACAAGACTTGGCTTGTCGTA 89851259
Query 1740 CTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1799
||| || || ||||| | ||| || || || || || || ||||||| | |||
Sbjct 89851260 TTTGCAGTTAGACTGCCAATTTTGTTGAGCTCCAATAAACTCTTTCCAGTGCTTGAAGTA 89851319
Query 1800 GTGAGGATCTACGTCATCGATGATGTTATA--CCACGCATCATTGCTGTAAAC-TTTGGG 1856
|| || || ||||||||||||||| || | ||| || || | | || |||
Sbjct 89851320 TTGTGGTGGTATGTCATCGATGATGTTGTAATCAACG--TCGTTTGAGAAGACTTTTTCT 89851377
Query 1857 GCTT-AGATCTAAATGACCGCATAGGTAATTATGAGGCCCTAATGACCTAGCCCACATCG 1915
||| || || | |||||| |||| ||| ||||| || || || || |||||||| |
Sbjct 89851378 TCTTGAGGTCCATATGACCACATACGTAGTTATGTTTTCCCAAAGATCTTGCCCACATTG 89851437
Query 1916 TTTTACCCGTACGACTGTCTCCCTCAATTACTAT--ACTTTGAGGCCTCAGAGGCCGCGC 1973
||||||| || | || | || || | ||| ||||| || |||| ||||||||
Sbjct 89851438 TTTTACCTGTCCTGGAATCACTTTCTATGATTATTGACTTT--GGTCTCATCGGCCGCGC 89851495
Query 1974 AGCGGC 1979
||||||
Sbjct 89851496 AGCGGC 89851501
>seq11
Length=168460249
Score = 82.4 bits (90), Expect = 1e-12
Identities = 162/240 (68%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 1680 TCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTA 1739
|||||| ||||| || | ||| || || || || ||||| | || |||||| |||||
Sbjct 165527604 TCCTGGGTTGCATAGCATGATTGTTGGTATGCCTCCTTTGAAAAGACTTGGCTTGCCGTA 165527545
Query 1740 CTTGGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTA 1799
||| | || ||||| | | ||| || || || || || || ||||| | | |||
Sbjct 165527544 TTTGCAGTAAGACTGCCAATTTCGTTGAGCTCCAATAAACTCTTTCCAGTGCATGAAGTA 165527485
Query 1800 GTGAGGATCTACGTCATCGATGATGTTATACCACGCATCATTGCTGTAAACTTTGGGGCT 1859
|| || || ||||||||||||||| || || | || | | ||||| | |
Sbjct 165527484 TTGTGGTGGTATGTCATCGATGATGTTGTAGTCAGCGTTGTTTGAGAAGACTTTTTTGTT 165527425
Query 1860 TAGATCTAAATGACCGCATAGGTAATTATGAGGCCCTAATGACCTAGCCCACATCGTTTT 1919
| || | |||||| |||| ||| ||||| || || || || |||||||| |||||
Sbjct 165527424 GTGGTCCATATGACCACATATGTAGTTATGTCTTCCCAAAGATCTTGCCCACATTGTTTT 165527365
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 8678259106176
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |